Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012683

Physical Location & Seq

Genomic Coordinates Forward (+)

16015896 .. 16021508

Gene Structure 5613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00094640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGTCGCCTCCTCCTTCCGATCGTCTCCATGGTGGTCTCCGTCGACGATTCTCACTCACGGCGGCGCTGCAAGGCTGCACGGTTGGAGGAAGCACGACCGGCCGGAAAATGCGGCTCCGACGTCGGCAAAGCTTCGGTTTGCCATTTTGATCTTCTAGCTGAAAAAAGTTGGGAGGTGGATCTTGATTATGTTGAAACTCTTGTGGATAACAACACTGCCGCCATTGTTGTCATTAACCATAGCAATATTCCTTGTGAAAATGTCTTCACATACCAGCATTTGAAAAAGTGTGTCTGTGTGTTAGAAATTAACATGTTGGAAGTCTATGGCCGTTTGGCTTTTGGCAGTAACCCCTTTGCGCCTATGGGAAAGTTCAGTTCAATTATACCAGTTCTTACTCTTGGTTCTATATCAAAGGCATGGATTATTGTGGACAGCATTAAGAACTATCTTGACGTCACTTATGACCCGGCAACCTTTCTTCAGGCCATGGCTCCCCGATCTAACAACACAGCCAAAGCTAAAGTAATAGCACTAAGGATGAAGGCACTGCAAATGAAAGAGGTACAAAAAACAGTGTCGAAACCAGCTGTTGAAGAGACTGATAATGCACCACCTAAATCTGCCTTCACCAAACATGATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004838 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016740 GO:0016769 GO:0019439 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0070547 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00130 ko00270 ko00350 ko00360 ko00400 ko00401 ko00950 ko00960 ko01100 ko01110 ko01130 ko01230 map00130 map00270 map00350 map00360 map00400 map00401 map00950 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

216

Amino Acids

23.83

Weight (kDa)

8.48

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012683)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122481 RchiOBHm_Chr2g0165651 RchiOBHm_Chr4g0388161 RchiOBHm_Chr4g0393341 RchiOBHm_Chr4g0421991 RchiOBHm_Chr5g0042521 RchiOBHm_Chr6g0248831 RchiOBHm_Chr6g0261471
rosa_multiflora	Rmu_ssc0000175.1_g000014
rosa_roxburghii	Rroxscaffold_2G00094640 Rroxscaffold_4G00322740 Rroxscaffold_5G00347970 Rroxscaffold_7G00174730 Rroxscaffold_7G00210360
rosa_rugosa	Rorug05G0030700 Rorug05G0531300.1
rosa_samantha	Rh2BG595000 Rh7BG190400 Rh7BG475700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	126, 462
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	3 cut(s)	64, 114, 222
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	2 cut(s)	102, 331
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	2 cut(s)	123, 459
AfaI	GTAC	1 cut(s)	570
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	4 cut(s)	197, 286, 384, 599
AluBI	AGCT	4 cut(s)	134, 161, 524, 593
AluI	AGCT	4 cut(s)	134, 161, 524, 593
Alw26I	GTCTC	3 cut(s)	31, 43, 596
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	3 cut(s)	102, 331, 489
ApeKI	GCWGC	2 cut(s)	69, 77
AspLEI	GCGC	2 cut(s)	69, 364
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	56, 64
BceAI	ACGGC	2 cut(s)	77, 318
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	3 cut(s)	31, 43, 596
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	5 cut(s)	65, 70, 78, 115, 222
BlsI	GCNGC	5 cut(s)	66, 71, 79, 116, 223
Bme1390I	CCNGG	1 cut(s)	473
BmiI	GGNNCC	2 cut(s)	118, 498
BmrFI	CCNGG	1 cut(s)	473
BpiI	GAAGAC	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	473
BsaHI	GRCGYC	2 cut(s)	123, 459
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	30, 492
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	392
BseDI	CCNNGG	2 cut(s)	30, 492
BseGI	GGATG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	392
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	56, 64
BsgI	GTGCAG	1 cut(s)	63
Bsh1285I	CGRYCG	3 cut(s)	24, 101, 105
BshFI	GGCC	3 cut(s)	104, 333, 491
BsiEI	CGRYCG	3 cut(s)	24, 101, 105
BsiSI	CCGG	3 cut(s)	101, 105, 473
BsmAI	GTCTC	3 cut(s)	31, 43, 596
BsmBI	CGTCTC	1 cut(s)	31
BsnI	GGCC	3 cut(s)	104, 333, 491
Bso31I	GGTCTC	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	21, 151, 181, 503, 643
Bsp19I	CCATGG	2 cut(s)	30, 492
BspACI	CCGC	3 cut(s)	64, 114, 222
BspANI	GGCC	3 cut(s)	104, 333, 491
BspLI	GGNNCC	2 cut(s)	118, 498
BspPI	GGATC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	392
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	30, 492
BssMI	GATC	5 cut(s)	21, 151, 181, 503, 643
BssNI	GRCGYC	2 cut(s)	123, 459
BssT1I	CCWWGG	2 cut(s)	30, 492
Bst4CI	ACNGT	2 cut(s)	84, 580
Bst6I	CTCTTC	1 cut(s)	594
BstACI	GRCGYC	2 cut(s)	123, 459
BstDEI	CTNAG	1 cut(s)	539
BstDSI	CCRYGG	2 cut(s)	30, 492
BstF5I	GGATG	1 cut(s)	549
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	2 cut(s)	69, 364
BstKTI	GATC	5 cut(s)	24, 154, 184, 506, 646
BstMAI	GTCTC	3 cut(s)	31, 43, 596
BstMBI	GATC	5 cut(s)	21, 151, 181, 503, 643
BstMCI	CGRYCG	3 cut(s)	24, 101, 105
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	56, 64
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BstZI	CGGCCG	1 cut(s)	102
BsuRI	GGCC	3 cut(s)	104, 333, 491
BtgI	CCRYGG	2 cut(s)	30, 492
BtsCI	GGATG	1 cut(s)	549
BtsI	GCAGTG	2 cut(s)	216, 551
BtsIMutI	CAGTG	3 cut(s)	216, 551, 585
CfoI	GCGC	2 cut(s)	69, 364
Cfr10I	RCCGGY	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	5 cut(s)	31, 316, 423, 493, 641
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	1 cut(s)	539
DpnI	GATC	5 cut(s)	23, 153, 183, 505, 645
DpnII	GATC	5 cut(s)	21, 151, 181, 503, 643
EaeI	YGGCCR	2 cut(s)	102, 331
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	30, 492
Eco31I	GGTCTC	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	470
EcoT14I	CCWWGG	2 cut(s)	30, 492
ErhI	CCWWGG	2 cut(s)	30, 492
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	5 cut(s)	34, 319, 426, 496, 644
FatI	CATG	5 cut(s)	30, 315, 422, 492, 640
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	5 cut(s)	65, 70, 78, 115, 222
FokI	GGATG	1 cut(s)	556
Fsp4HI	GCNGC	5 cut(s)	65, 70, 78, 115, 222
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	2 cut(s)	68, 363
GluI	GCNGC	5 cut(s)	65, 70, 78, 115, 222
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	3 cut(s)	104, 333, 491
HapII	CCGG	3 cut(s)	101, 105, 473
HhaI	GCGC	2 cut(s)	69, 364
Hin1I	GRCGYC	2 cut(s)	123, 459
Hin1II	CATG	5 cut(s)	34, 319, 426, 496, 644
Hin6I	GCGC	2 cut(s)	67, 362
HinP1I	GCGC	2 cut(s)	67, 362
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	3 cut(s)	101, 105, 473
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	46, 436
Hpy188I	TCNGA	2 cut(s)	21, 121
Hpy188III	TCNNGA	2 cut(s)	185, 455
Hpy8I	GTNNAC	2 cut(s)	46, 436
Hpy99I	CGWCG	4 cut(s)	47, 50, 125, 128
HpyAV	CCTTC	3 cut(s)	26, 541, 640
HpyCH4III	ACNGT	2 cut(s)	84, 580
HpyCH4IV	ACGT	2 cut(s)	123, 459
HpyCH4V	TGCA	4 cut(s)	72, 80, 556, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	539
HpySE526I	ACGT	2 cut(s)	123, 459
Hsp92I	GRCGYC	2 cut(s)	123, 459
Hsp92II	CATG	5 cut(s)	34, 319, 426, 496, 644
HspAI	GCGC	2 cut(s)	67, 362
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	5 cut(s)	21, 151, 181, 503, 643
LmnI	GCTCC	2 cut(s)	122, 502
LpnPI	CCDG	7 cut(s)	114, 118, 290, 405, 473, 486, 603
Lsp1109I	GCAGC	2 cut(s)	56, 64
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	2 cut(s)	123, 459
MaeIII	GTNAC	2 cut(s)	350, 460
MalI	GATC	5 cut(s)	23, 153, 183, 505, 645
MboI	GATC	5 cut(s)	21, 151, 181, 503, 643
MboII	GAAGA	4 cut(s)	146, 259, 476, 611
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	2 cut(s)	309, 384
MmeI	TCCRAC	3 cut(s)	66, 144, 300
MnlI	CCTC	5 cut(s)	20, 23, 82, 169, 559
MseI	TTAA	3 cut(s)	237, 312, 444
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	3 cut(s)	101, 105, 473
MspR9I	CCNGG	1 cut(s)	473
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	473
NcoI	CCATGG	2 cut(s)	30, 492
NdeII	GATC	5 cut(s)	21, 151, 181, 503, 643
NlaIII	CATG	5 cut(s)	34, 319, 426, 496, 644
NlaIV	GGNNCC	2 cut(s)	118, 498
NmuCI	GTSAC	1 cut(s)	460
NspI	RCATGY	1 cut(s)	319
PciI	ACATGT	1 cut(s)	315
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	5 cut(s)	66, 71, 79, 116, 223
Ple19I	CGATCG	1 cut(s)	24
PscI	ACATGT	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	118, 498
PsuI	RGATCY	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	24
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	3 cut(s)	237, 312, 444
SatI	GCNGC	5 cut(s)	65, 70, 78, 115, 222
Sau3AI	GATC	5 cut(s)	21, 151, 181, 503, 643
ScrFI	CCNGG	1 cut(s)	473
SgrDI	CGTCGACG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	309, 384
SsiI	CCGC	3 cut(s)	64, 114, 222
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	2 cut(s)	30, 492
TaaI	ACNGT	2 cut(s)	84, 580
TaiI	ACGT	2 cut(s)	126, 462
TaqI	TCGA	2 cut(s)	45, 584
TasI	AATT	2 cut(s)	309, 384
TauI	GCSGC	3 cut(s)	67, 117, 224
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	3 cut(s)	237, 312, 444
Tru9I	TTAA	3 cut(s)	237, 312, 444
TscAI	CASTG	3 cut(s)	223, 558, 585
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	69, 77
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	2 cut(s)	560, 575
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	223, 558, 585
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	158
ZraI	GACGTC	2 cut(s)	124, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.