Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012683

Physical Location & Seq

Genomic Coordinates Reverse (-)

53206947 .. 53216286

Gene Structure 9340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGATCGCCTCCTTGCTCCGGTCGTCTTTGTGGTGGTCTCCATCGACGATTCTTACCCACGGCGGCGCTGCAAGTCTGCACGCTTCGAGAAATCCCAAACCATTACCAGCTCCTCCGCCAAAATCAAGTCACTCTCCGTCTCCGAGATCACACCCCTCGGCTCTCCAACCTCTCAATTGTCAAATCCGCCTCCACCTTCGCCTTCGCCTTCGCCCGCGCCTGCGCCTTCGCCATTGAGCCATCGGAGGCGGAGCTCCATAAGTTCGGTGTCTCCGACGATATCGGAGACTTTGTCAAGGGACTCACTTCCGAATTTTTTTATTCGTGTTATGCGGCATGGTAAGTTGCCATCCTGGGTTGAAAGTTTTGAGCCCCTATTCATCGAAGATGCTCATGGACTGCTAAAAGCTGCCATTAGGGACCACGATCGTGTTGTTTTTCTTGAAAATGAGTTGCTAACTGGGTTATGGACTGAATTGGGTTTTGATCAGGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTCTGGTGTAGTGCATTTGGTATGTTTAATGCTGAAAGGAAGAAGAAGGGCCGGAGTTCGGTCATTTGGAAAAATTTGGCGGTGAGTTTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.33

Weight (kDa)

9.79

Isoelectric Point (pI)

68.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012683)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122481 RchiOBHm_Chr2g0165651 RchiOBHm_Chr4g0388161 RchiOBHm_Chr4g0393341 RchiOBHm_Chr4g0421991 RchiOBHm_Chr5g0042521 RchiOBHm_Chr6g0248831 RchiOBHm_Chr6g0261471
rosa_multiflora	Rmu_ssc0000175.1_g000014
rosa_roxburghii	Rroxscaffold_2G00094640 Rroxscaffold_4G00322740 Rroxscaffold_5G00347970 Rroxscaffold_7G00174730 Rroxscaffold_7G00210360
rosa_rugosa	Rorug05G0030700 Rorug05G0531300.1
rosa_samantha	Rh2BG595000 Rh7BG190400 Rh7BG475700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	564
AccII	CGCG	1 cut(s)	218
AciI	CCGC	7 cut(s)	64, 117, 188, 216, 250, 334, 641
AclWI	GGATC	2 cut(s)	12, 526
AcsI	RAATTY	2 cut(s)	313, 634
AfiI	CCNNNNNNNGG	3 cut(s)	19, 564, 619
AgsI	TTSAA	3 cut(s)	362, 446, 544
AjnI	CCWGG	2 cut(s)	353, 504
AleI	CACNNNNGTG	1 cut(s)	429
AluBI	AGCT	3 cut(s)	111, 255, 410
AluI	AGCT	3 cut(s)	111, 255, 410
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	4 cut(s)	43, 145, 276, 281
AlwI	GGATC	2 cut(s)	12, 526
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	4 cut(s)	69, 410, 522, 550
ApoI	RAATTY	2 cut(s)	313, 634
AspLEI	GCGC	3 cut(s)	69, 220, 226
AspS9I	GGNCC	2 cut(s)	421, 610
AsuHPI	GGTGA	2 cut(s)	643, 655
AvaII	GGWCC	1 cut(s)	421
BanII	GRGCYC	2 cut(s)	257, 375
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	4 cut(s)	56, 397, 534, 562
BccI	CCATC	4 cut(s)	50, 249, 358, 503
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	355, 506
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	4 cut(s)	43, 145, 276, 281
BfoI	RGCGCY	1 cut(s)	70
BisI	GCNGC	6 cut(s)	65, 70, 335, 411, 523, 551
BlsI	GCNGC	6 cut(s)	66, 71, 336, 412, 524, 552
Bme1390I	CCNGG	2 cut(s)	355, 506
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	421, 610
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	2 cut(s)	355, 506
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	379, 537
BmuI	ACTGGG	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	521
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	59, 157, 354
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 564, 619
Bse1I	ACTGG	1 cut(s)	466
BseBI	CCWGG	2 cut(s)	355, 506
BseDI	CCNNGG	3 cut(s)	59, 157, 354
BseGI	GGATG	2 cut(s)	350, 514
BseLI	CCNNNNNNNGG	3 cut(s)	19, 564, 619
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	103
BseXI	GCAGC	4 cut(s)	56, 397, 534, 562
BsgI	GTGCAG	2 cut(s)	63, 541
Bsh1236I	CGCG	1 cut(s)	218
Bsh1285I	CGRYCG	2 cut(s)	24, 430
BshFI	GGCC	1 cut(s)	612
BsiEI	CGRYCG	2 cut(s)	24, 430
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	20, 613
BslFI	GGGAC	2 cut(s)	314, 434
BslI	CCNNNNNNNGG	3 cut(s)	19, 564, 619
BsmAI	GTCTC	4 cut(s)	43, 145, 276, 281
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	2 cut(s)	314, 434
BsnI	GGCC	1 cut(s)	612
Bso31I	GGTCTC	1 cut(s)	43
Bsp1286I	GDGCHC	2 cut(s)	257, 375
Bsp143I	GATC	5 cut(s)	4, 147, 427, 487, 531
BspACI	CCGC	7 cut(s)	64, 117, 188, 216, 250, 334, 641
BspANI	GGCC	1 cut(s)	612
BspFNI	CGCG	1 cut(s)	218
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	2 cut(s)	12, 526
BspTNI	GGTCTC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	3 cut(s)	59, 157, 354
BssMI	GATC	5 cut(s)	4, 147, 427, 487, 531
Bst2UI	CCWGG	2 cut(s)	355, 506
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	4 cut(s)	82, 216, 222, 500
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	350, 514
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	3 cut(s)	69, 220, 226
BstKTI	GATC	5 cut(s)	7, 150, 430, 490, 534
BstMAI	GTCTC	4 cut(s)	43, 145, 276, 281
BstMBI	GATC	5 cut(s)	4, 147, 427, 487, 531
BstMCI	CGRYCG	2 cut(s)	24, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	519
BstNI	CCWGG	2 cut(s)	355, 506
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	353, 504
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	4 cut(s)	56, 397, 534, 562
BsuRI	GGCC	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	350, 514
Cac8I	GCNNGC	4 cut(s)	82, 216, 222, 500
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	3 cut(s)	69, 220, 226
Cfr13I	GGNCC	2 cut(s)	421, 610
CviAII	CATG	5 cut(s)	338, 395, 499, 529, 559
CviJI	RGCY	9 cut(s)	111, 162, 240, 255, 373, 410, 525, 553, 612
CviKI_1	RGCY	9 cut(s)	111, 162, 240, 255, 373, 410, 525, 553, 612
DpnI	GATC	5 cut(s)	6, 149, 429, 489, 533
DpnII	GATC	5 cut(s)	4, 147, 427, 487, 531
EciI	GGCGGA	3 cut(s)	106, 177, 265
Ecl136II	GAGCTC	1 cut(s)	255
Eco24I	GRGCYC	2 cut(s)	257, 375
Eco31I	GGTCTC	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	255
EcoRII	CCWGG	2 cut(s)	353, 504
EcoRV	GATATC	1 cut(s)	282
EcoT38I	GRGCYC	2 cut(s)	257, 375
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	5 cut(s)	341, 398, 502, 532, 562
FaiI	YATR	9 cut(s)	260, 332, 339, 396, 469, 500, 530, 560, 584
FaqI	GGGAC	2 cut(s)	314, 434
FatI	CATG	5 cut(s)	337, 394, 498, 528, 558
FauI	CCCGC	1 cut(s)	223
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	6 cut(s)	65, 70, 335, 411, 523, 551
FokI	GGATG	2 cut(s)	337, 521
FriOI	GRGCYC	2 cut(s)	257, 375
Fsp4HI	GCNGC	6 cut(s)	65, 70, 335, 411, 523, 551
GlaI	GCGC	3 cut(s)	68, 219, 225
GluI	GCNGC	6 cut(s)	65, 70, 335, 411, 523, 551
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	2 cut(s)	20, 613
HhaI	GCGC	3 cut(s)	69, 220, 226
Hin1II	CATG	5 cut(s)	341, 398, 502, 532, 562
Hin6I	GCGC	3 cut(s)	67, 218, 224
HinP1I	GCGC	3 cut(s)	67, 218, 224
HinfI	GANTC	2 cut(s)	50, 302
HpaII	CCGG	2 cut(s)	20, 613
HphI	GGTGA	2 cut(s)	643, 655
Hpy188I	TCNGA	5 cut(s)	145, 246, 276, 286, 312
Hpy188III	TCNNGA	4 cut(s)	88, 443, 529, 544
Hpy99I	CGWCG	2 cut(s)	50, 280
HpyAV	CCTTC	5 cut(s)	207, 213, 219, 237, 601
HpyCH4V	TGCA	5 cut(s)	72, 80, 522, 550, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	519
Hsp92II	CATG	5 cut(s)	341, 398, 502, 532, 562
HspAI	GCGC	3 cut(s)	67, 218, 224
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	5 cut(s)	4, 147, 427, 487, 531
LmnI	GCTCC	5 cut(s)	22, 116, 252, 260, 507
Lsp1109I	GCAGC	4 cut(s)	56, 397, 534, 562
LweI	GCATC	2 cut(s)	379, 537
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	5 cut(s)	6, 149, 429, 489, 533
MboI	GATC	5 cut(s)	4, 147, 427, 487, 531
MboII	GAAGA	3 cut(s)	398, 613, 616
MfeI	CAATTG	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	257, 375
MluCI	AATT	4 cut(s)	176, 313, 476, 634
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	2 cut(s)	191, 299
MnlI	CCTC	8 cut(s)	20, 124, 167, 181, 201, 240, 536, 545
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	2 cut(s)	20, 613
MspR9I	CCNGG	2 cut(s)	355, 506
MunI	CAATTG	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	355, 506
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	519
NdeII	GATC	5 cut(s)	4, 147, 427, 487, 531
NlaIII	CATG	5 cut(s)	341, 398, 502, 532, 562
NlaIV	GGNNCC	1 cut(s)	422
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	502
OliI	CACNNNNGTG	1 cut(s)	429
PaeI	GCATGC	1 cut(s)	502
PagI	TCATGA	1 cut(s)	528
PcsI	WCGNNNNNNNCGW	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	564
PfoI	TCCNGGA	1 cut(s)	504
PkrI	GCNGC	6 cut(s)	66, 71, 336, 412, 524, 552
Ple19I	CGATCG	1 cut(s)	430
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	353, 504
PspGI	CCWGG	2 cut(s)	353, 504
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	2 cut(s)	421, 610
PsyI	GACNNNGTC	1 cut(s)	292
PvuI	CGATCG	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	429
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	6 cut(s)	65, 70, 335, 411, 523, 551
Sau3AI	GATC	5 cut(s)	4, 147, 427, 487, 531
Sau96I	GGNCC	2 cut(s)	421, 610
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	355, 506
SduI	GDGCHC	2 cut(s)	257, 375
SetI	ASST	7 cut(s)	113, 173, 199, 257, 412, 495, 656
SfaNI	GCATC	2 cut(s)	379, 537
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	4 cut(s)	176, 313, 476, 634
SsiI	CCGC	7 cut(s)	64, 117, 188, 216, 250, 334, 641
SstI	GAGCTC	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	353, 504
TaqI	TCGA	3 cut(s)	45, 87, 384
TaqII	GACCGA	1 cut(s)	610
TasI	AATT	4 cut(s)	176, 313, 476, 634
TauI	GCSGC	2 cut(s)	67, 337
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	4 cut(s)	69, 410, 522, 550
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	127
Tth111I	GACNNNGTC	1 cut(s)	292
Van91I	CCANNNNNTGG	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	2 cut(s)	313, 634
XceI	RCATGY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.