Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012683

Physical Location & Seq

Genomic Coordinates Forward (+)

3325497 .. 3327726

Gene Structure 2230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGATTGCTCAGGGAATCAATGCCGGAGATGTTAAGAAGCTTCAGGACGCAGGGATCTACACCTGGCAATTCACCAAGAAGCTTCCTACTAACATGCATGGTGGGAATGGAAAGGTTGCTTACATTGATACTGAGGGAACTTTGTATCCTTTTCCTTTGTCCATCCAAACTAATGTTTCATGTTGCTTTTTATCAACAAAGGATGACCAAGAATTATCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000228 GO:0000280 GO:0000400 GO:0000724 GO:0000725 GO:0000730 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

Rad51

Protein Analysis

74

Amino Acids

8.12

Weight (kDa)

5.55

Isoelectric Point (pI)

22.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	22 - 51	2.3e-06	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012683)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0122481 RchiOBHm_Chr2g0165651 RchiOBHm_Chr4g0388161 RchiOBHm_Chr4g0393341 RchiOBHm_Chr4g0421991 RchiOBHm_Chr5g0042521 RchiOBHm_Chr6g0248831 RchiOBHm_Chr6g0261471
rosa_multiflora	Rmu_ssc0000175.1_g000014
rosa_roxburghii	Rroxscaffold_2G00094640 Rroxscaffold_4G00322740 Rroxscaffold_5G00347970 Rroxscaffold_7G00174730 Rroxscaffold_7G00210360
rosa_rugosa	Rorug05G0030700 Rorug05G0531300.1
rosa_samantha	Rh2BG595000 Rh7BG190400 Rh7BG475700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	62
AloI	GAACNNNNNNTCC	2 cut(s)	130, 162
AluBI	AGCT	2 cut(s)	40, 82
AluI	AGCT	2 cut(s)	40, 82
AlwI	GGATC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	64
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	162, 208
BseMII	CTCAG	2 cut(s)	23, 123
BsiSI	CCGG	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	22, 124
BspPI	GGATC	1 cut(s)	62
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	9, 132
BstF5I	GGATG	2 cut(s)	162, 208
BstKTI	GATC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	162, 208
CseI	GACGC	1 cut(s)	56
CviAII	CATG	3 cut(s)	94, 98, 180
CviJI	RGCY	2 cut(s)	40, 82
CviKI_1	RGCY	2 cut(s)	40, 82
DdeI	CTNAG	2 cut(s)	9, 132
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	62
EcoT22I	ATGCAT	1 cut(s)	99
FaeI	CATG	3 cut(s)	97, 101, 183
FaiI	YATR	4 cut(s)	95, 99, 181, 223
FatI	CATG	3 cut(s)	93, 97, 179
FokI	GGATG	2 cut(s)	149, 215
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	97, 101, 183
HindIII	AAGCTT	2 cut(s)	38, 80
HinfI	GANTC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	9, 132
Hsp92II	CATG	3 cut(s)	97, 101, 183
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	5 cut(s)	29, 36, 37, 49, 76
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MflI	RGATCY	1 cut(s)	54
MluCI	AATT	2 cut(s)	68, 212
MnlI	CCTC	1 cut(s)	127
Mph1103I	ATGCAT	1 cut(s)	99
MseI	TTAA	1 cut(s)	33
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
NdeII	GATC	1 cut(s)	54
NlaIII	CATG	3 cut(s)	97, 101, 183
NsiI	ATGCAT	1 cut(s)	99
NspI	RCATGY	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	54
SaqAI	TTAA	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	4 cut(s)	42, 65, 84, 117
Sse9I	AATT	2 cut(s)	68, 212
StyD4I	CCNGG	1 cut(s)	62
TasI	AATT	2 cut(s)	68, 212
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TspDTI	ATGAA	1 cut(s)	168
XceI	RCATGY	1 cut(s)	97
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.