RchiOBHm_Chr1g0318641

Structure-specific endonuclease subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009332
Physical Location & Seq
Reverse (-)
6206932 .. 6208303
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGATGACACGACTCTCCAGAACATTCCCTTCCGTGAAGCTCCCAAACCCTCACCCCTCCTCAATTCTATTACCATGTTCAACATTACTACCCAATATCAAATCAGAAGCAAAATCGAATTCTCCCTCAAAATCAAAACCAAAATCGAAGTCTTGGTCTGTGTACCTCATCCTTTCCACCAATGCACCCATCAAAACATACGTTGGTGTCACCACCGATTTCTCTCGCCGTCTGAAACAACACAATGGTGAACTAAAAGGTGGGGCAAAGGCATCCCGTGCTGGAAGACCGTGGATTTGTGCGTGCCTAATACATGGTTTCAAGGACCAAAATGAAGGTATTTGGTTTGAAACTTTGATAAAAGAGCTTGTGCTTCTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
GIY-YIG

Protein Analysis

127

Amino Acids

14.09

Weight (kDa)

10.08

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIY-YIG PF01541 52 - 123 2.7e-12 GIY-YIG catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 3 cut(s) 81, 322, 350
AleI CACNNNNGTG 1 cut(s) 246
AluBI AGCT 2 cut(s) 40, 367
AluI AGCT 2 cut(s) 40, 367
ApoI RAATTY 1 cut(s) 118
ArsI GACNNNNNNTTYG 6 cut(s) 134, 140, 166, 172, 279, 311
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 3 cut(s) 44, 202, 260
AvaII GGWCC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 292
BccI CCATC 1 cut(s) 197
BceAI ACGGC 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmsI GCATC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 2 cut(s) 168, 272
BseRI GAGGAG 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 291
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 304
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 2 cut(s) 168, 272
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 2 cut(s) 168, 272
Cac8I GCNNGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 75, 314, 381
CviJI RGCY 2 cut(s) 40, 367
CviKI_1 RGCY 2 cut(s) 40, 367
CviQI GTAC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 118
FaeI CATG 3 cut(s) 78, 317, 384
FaiI YATR 4 cut(s) 76, 199, 315, 382
FatI CATG 3 cut(s) 74, 313, 380
FokI GGATG 2 cut(s) 155, 259
Hin1II CATG 3 cut(s) 78, 317, 384
HinfI GANTC 1 cut(s) 12
HphI GGTGA 3 cut(s) 44, 202, 260
Hpy166II GTNNAC 2 cut(s) 163, 251
Hpy188I TCNGA 2 cut(s) 106, 234
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 2 cut(s) 163, 251
HpyAV CCTTC 2 cut(s) 39, 329
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 3 cut(s) 78, 317, 384
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 31, 267
LweI GCATC 1 cut(s) 281
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 208
MboII GAAGA 1 cut(s) 297
MluCI AATT 2 cut(s) 63, 118
MlyI GAGTC 1 cut(s) 6
MnlI CCTC 5 cut(s) 60, 67, 70, 136, 176
MslI CAYNNNNRTG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 278
NlaIII CATG 3 cut(s) 78, 317, 384
NmuCI GTSAC 1 cut(s) 208
OliI CACNNNNGTG 1 cut(s) 246
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 325
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 325
SchI GAGTC 1 cut(s) 6
SetI ASST 6 cut(s) 42, 168, 204, 262, 340, 369
SfaNI GCATC 1 cut(s) 281
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 246
Sse9I AATT 2 cut(s) 63, 118
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 116, 146
TasI AATT 2 cut(s) 63, 118
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.