RchiOBHm_Chr1g0322011

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007291
Physical Location & Seq
Forward (+)
9514303 .. 9517631
3329 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 855 bp
ATGTTCCAAACAGATCTAATTTGCAGCGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTATGGAGGTGGGAGAAGAGCTGAGCCAACCGAAGTGGAAGAGAAGTGTTCCAAAGAGATTCAGCTCACCAAAGTCATCTTCTTCTTTGTCTTGTCTTATAAACAATCTTGATGATGGCTGCCTCATGCACATCTTTAGCTTCCTCTCTCCTATCCCAGATCGCTATAACACCGCCCTGGTTTGCCACAGATGGCTTTTCTTGGCATGTCACCCTCGCTTGTGGCTGCGAGTTGAACGATCAATTAAAGATCCATTGGAGCCTGGCGTCTTCCCTAGTATTGAGACAGCGGTTGCTGCCGCAAGGCCTGGCGACACCATTCTAATTTCAGCAGGGGGAAGGCATCTTGCTTCTGATATTCAAATAAAAAAGCCGCTTTGCCTGATTGGTGGAGGTGAGCTACCGGATGAGACAACCCTCATTTGTTCTCGCGGTGCAGACAGTGCATTGGAGTTCCTGTCCACCTGCAAATTGGCAAACTTAACTGTGAAGGCAGAGCTGGGTTCTTGCTTGCTTCATAGAAGTGGAAGGCTCACAATAGATGGGTGCGTGCTTCAGTGTGAGACGAATCCCCTAGACTTCCTTTCGGTCCCCATTGTGAGTACAGCAAGTGCGCAAACTGTGTTGTCTTCTTCGGTGAAGTGTTATAAGGATGGTGTTTCTGTTTCTCGGACTCGAATTGAAGGAGGTGCCAAGGCTGTTTCAACTAGTGGATACCTGACATTGCAGCGAGTACGAGTCATTTATGCTCGGACGTCTCTCGTTTTCTGGTTTGATATGGAGCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

284

Amino Acids

31.37

Weight (kDa)

7.96

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 63 - 99 8.8e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 164, 711
AarI CACCTGC 1 cut(s) 536
AatII GACGTC 1 cut(s) 821
Acc16I TGCGCA 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 752
AccII CGCG 1 cut(s) 495
AciI CCGC 6 cut(s) 27, 237, 353, 363, 437, 495
AclWI GGATC 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 602
AcyI GRCGYC 2 cut(s) 330, 818
AfaI GTAC 2 cut(s) 667, 798
AgsI TTSAA 4 cut(s) 299, 425, 746, 768
AhlI ACTAGT 1 cut(s) 770
AjnI CCWGG 3 cut(s) 240, 325, 370
AjuI GAANNNNNNNTTGG 2 cut(s) 127, 159
AluBI AGCT 5 cut(s) 85, 129, 204, 463, 562
AluI AGCT 5 cut(s) 85, 129, 204, 463, 562
Alw26I GTCTC 4 cut(s) 341, 467, 620, 825
AlwI GGATC 1 cut(s) 308
AoxI GGCC 1 cut(s) 368
ApeKI GCWGC 5 cut(s) 24, 183, 289, 359, 790
AspLEI GCGC 1 cut(s) 679
AspS9I GGNCC 1 cut(s) 652
AsuHPI GGTGA 4 cut(s) 123, 266, 470, 712
AvaII GGWCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 752
BbsI GAAGAC 2 cut(s) 325, 684
BbvI GCAGC 5 cut(s) 36, 170, 276, 346, 802
BccI CCATC 4 cut(s) 173, 249, 599, 710
BciT130I CCWGG 3 cut(s) 242, 327, 372
BciVI GTATCC 1 cut(s) 770
BcoDI GTCTC 4 cut(s) 341, 467, 620, 825
BcuI ACTAGT 1 cut(s) 770
BfaI CTAG 3 cut(s) 339, 638, 771
BfuAI ACCTGC 1 cut(s) 536
BfuI GTATCC 1 cut(s) 770
BglII AGATCT 1 cut(s) 13
BisI GCNGC 7 cut(s) 25, 184, 290, 360, 363, 437, 791
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 7 cut(s) 26, 185, 291, 361, 364, 438, 792
Bme1390I CCNGG 3 cut(s) 242, 327, 372
Bme18I GGWCC 1 cut(s) 652
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 3 cut(s) 324, 654, 754
BmrFI CCNGG 3 cut(s) 242, 327, 372
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 2 cut(s) 325, 684
Bpu1102I GCTNAGC 1 cut(s) 86
BsaHI GRCGYC 2 cut(s) 330, 818
BsaJI CCNNGG 2 cut(s) 240, 756
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bse3DI GCAATG 1 cut(s) 785
BseBI CCWGG 3 cut(s) 242, 327, 372
BseDI CCNNGG 2 cut(s) 240, 756
BseGI GGATG 2 cut(s) 475, 721
BseMI GCAATG 1 cut(s) 785
BseMII CTCAG 1 cut(s) 77
BseXI GCAGC 5 cut(s) 36, 170, 276, 346, 802
BseYI CCCAGC 1 cut(s) 562
BsgI GTGCAG 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 495
BshFI GGCC 1 cut(s) 370
BshNI GGYRCC 1 cut(s) 752
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 638
BsmAI GTCTC 4 cut(s) 341, 467, 620, 825
BsmBI CGTCTC 2 cut(s) 620, 825
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 1 cut(s) 370
Bsp143I GATC 4 cut(s) 13, 223, 302, 313
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 6 cut(s) 27, 237, 353, 363, 437, 495
BspANI GGCC 1 cut(s) 370
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 495
BspLI GGNNCC 3 cut(s) 324, 654, 754
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 1 cut(s) 308
BspQI GCTCTTC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 752
BsrDI GCAATG 1 cut(s) 785
BssECI CCNNGG 2 cut(s) 240, 756
BssMI GATC 4 cut(s) 13, 223, 302, 313
BssNI GRCGYC 2 cut(s) 330, 818
BssT1I CCWWGG 1 cut(s) 756
Bst2UI CCWGG 3 cut(s) 242, 327, 372
Bst4CI ACNGT 3 cut(s) 506, 550, 685
Bst6I CTCTTC 2 cut(s) 75, 98
BstACI GRCGYC 2 cut(s) 330, 818
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 575, 614
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 475, 721
BstFNI CGCG 1 cut(s) 495
BstHHI GCGC 1 cut(s) 679
BstKTI GATC 4 cut(s) 16, 226, 305, 316
BstMAI GTCTC 4 cut(s) 341, 467, 620, 825
BstMBI GATC 4 cut(s) 13, 223, 302, 313
BstMWI GCNNNNNNNGC 2 cut(s) 359, 506
BstNI CCWGG 3 cut(s) 242, 327, 372
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 3 cut(s) 240, 325, 370
BstUI CGCG 1 cut(s) 495
BstV1I GCAGC 5 cut(s) 36, 170, 276, 346, 802
BstV2I GAAGAC 2 cut(s) 325, 684
BstX2I RGATCY 2 cut(s) 13, 313
BstYI RGATCY 2 cut(s) 13, 313
BsuI GTATCC 1 cut(s) 770
BsuRI GGCC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 475, 721
BtsIMutI CAGTG 2 cut(s) 511, 626
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 575, 614
CfoI GCGC 1 cut(s) 679
Cfr13I GGNCC 1 cut(s) 652
CseI GACGC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 666, 797
CspCI CAANNNNNGTGG 2 cut(s) 80, 115
CviAII CATG 2 cut(s) 190, 270
CviQI GTAC 2 cut(s) 666, 797
DdeI CTNAG 1 cut(s) 86
DpnI GATC 4 cut(s) 15, 225, 304, 315
DpnII GATC 4 cut(s) 13, 223, 302, 313
Eam1104I CTCTTC 2 cut(s) 75, 98
EarI CTCTTC 2 cut(s) 75, 98
Eco130I CCWWGG 1 cut(s) 756
Eco147I AGGCCT 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 602
EcoRII CCWGG 3 cut(s) 240, 325, 370
EcoT14I CCWWGG 1 cut(s) 756
ErhI CCWWGG 1 cut(s) 756
Esp3I CGTCTC 2 cut(s) 620, 825
FaeI CATG 2 cut(s) 193, 273
FaiI YATR 9 cut(s) 68, 164, 191, 231, 271, 582, 711, 810, 842
FaqI GGGAC 1 cut(s) 638
FatI CATG 2 cut(s) 189, 269
FauI CCCGC 1 cut(s) 20
Fnu4HI GCNGC 7 cut(s) 25, 184, 290, 360, 363, 437, 791
FokI GGATG 2 cut(s) 482, 728
Fsp4HI GCNGC 7 cut(s) 25, 184, 290, 360, 363, 437, 791
FspBI CTAG 3 cut(s) 339, 638, 771
FspI TGCGCA 1 cut(s) 678
GlaI GCGC 1 cut(s) 678
GluI GCNGC 7 cut(s) 25, 184, 290, 360, 363, 437, 791
GsaI CCCAGC 1 cut(s) 566
HaeIII GGCC 1 cut(s) 370
HapII CCGG 1 cut(s) 467
HgaI GACGC 1 cut(s) 319
HhaI GCGC 1 cut(s) 679
Hin1I GRCGYC 2 cut(s) 330, 818
Hin1II CATG 2 cut(s) 193, 273
Hin6I GCGC 1 cut(s) 677
HinP1I GCGC 1 cut(s) 677
HinfI GANTC 4 cut(s) 123, 631, 736, 801
HpaII CCGG 1 cut(s) 467
HphI GGTGA 4 cut(s) 123, 266, 470, 712
Hpy166II GTNNAC 1 cut(s) 525
Hpy188I TCNGA 3 cut(s) 418, 735, 816
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 525
HpyAV CCTTC 4 cut(s) 396, 547, 585, 740
HpyCH4III ACNGT 3 cut(s) 506, 550, 685
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 6 cut(s) 24, 193, 500, 509, 531, 790
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 506
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 818
Hsp92I GRCGYC 2 cut(s) 330, 818
Hsp92II CATG 2 cut(s) 193, 273
HspAI GCGC 1 cut(s) 677
Kzo9I GATC 4 cut(s) 13, 223, 302, 313
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 2 cut(s) 322, 844
Lsp1109I GCAGC 5 cut(s) 36, 170, 276, 346, 802
LweI GCATC 1 cut(s) 415
MaeI CTAG 3 cut(s) 339, 638, 771
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 1 cut(s) 272
MalI GATC 4 cut(s) 15, 225, 304, 315
MboI GATC 4 cut(s) 13, 223, 302, 313
MboII GAAGA 7 cut(s) 92, 115, 135, 138, 325, 684, 687
MflI RGATCY 2 cut(s) 13, 313
MluCI AATT 5 cut(s) 18, 306, 387, 533, 741
MlyI GAGTC 2 cut(s) 730, 810
MnlI CCTC 8 cut(s) 55, 64, 197, 218, 288, 449, 491, 743
MseI TTAA 2 cut(s) 309, 545
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 2 cut(s) 27, 353
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 3 cut(s) 242, 327, 372
MvaI CCWGG 3 cut(s) 242, 327, 372
MvnI CGCG 1 cut(s) 495
MwoI GCNNNNNNNGC 2 cut(s) 359, 506
NdeII GATC 4 cut(s) 13, 223, 302, 313
NlaIII CATG 2 cut(s) 193, 273
NlaIV GGNNCC 3 cut(s) 324, 654, 754
NmuCI GTSAC 1 cut(s) 272
NsbI TGCGCA 1 cut(s) 678
NspI RCATGY 1 cut(s) 273
PaqCI CACCTGC 1 cut(s) 536
PceI AGGCCT 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 2 cut(s) 123, 631
PkrI GCNGC 7 cut(s) 26, 185, 291, 361, 364, 438, 792
PleI GAGTC 2 cut(s) 730, 809
PpsI GAGTC 2 cut(s) 730, 809
PsiI TTATAA 2 cut(s) 164, 711
Psp6I CCWGG 3 cut(s) 240, 325, 370
PspFI CCCAGC 1 cut(s) 562
PspGI CCWGG 3 cut(s) 240, 325, 370
PspN4I GGNNCC 3 cut(s) 324, 654, 754
PspPI GGNCC 1 cut(s) 652
PsuI RGATCY 2 cut(s) 13, 313
RsaI GTAC 2 cut(s) 667, 798
RsaNI GTAC 2 cut(s) 666, 797
RseI CAYNNNNRTG 1 cut(s) 585
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 309, 545
SatI GCNGC 7 cut(s) 25, 184, 290, 360, 363, 437, 791
Sau3AI GATC 4 cut(s) 13, 223, 302, 313
Sau96I GGNCC 1 cut(s) 652
SchI GAGTC 2 cut(s) 730, 810
ScrFI CCNGG 3 cut(s) 242, 327, 372
SfaNI GCATC 1 cut(s) 415
SinI GGWCC 1 cut(s) 652
SmiMI CAYNNNNRTG 1 cut(s) 585
SpeI ACTAGT 1 cut(s) 770
Sse9I AATT 5 cut(s) 18, 306, 387, 533, 741
SseBI AGGCCT 1 cut(s) 370
SsiI CCGC 6 cut(s) 27, 237, 353, 363, 437, 495
SspMI CTAG 3 cut(s) 339, 638, 771
StuI AGGCCT 1 cut(s) 370
StyD4I CCNGG 3 cut(s) 240, 325, 370
StyI CCWWGG 1 cut(s) 756
TaaI ACNGT 3 cut(s) 506, 550, 685
TaiI ACGT 1 cut(s) 821
TaqI TCGA 1 cut(s) 739
TaqII GACCGA 1 cut(s) 640
TasI AATT 5 cut(s) 18, 306, 387, 533, 741
TatI WGTACW 1 cut(s) 665
TauI GCSGC 2 cut(s) 365, 439
TfiI GAWTC 2 cut(s) 123, 631
Tru1I TTAA 2 cut(s) 309, 545
Tru9I TTAA 2 cut(s) 309, 545
TscAI CASTG 2 cut(s) 511, 626
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 5 cut(s) 24, 183, 289, 359, 790
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 569
TspRI CASTG 2 cut(s) 511, 626
VpaK11BI GGWCC 1 cut(s) 652
XceI RCATGY 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XspI CTAG 3 cut(s) 339, 638, 771
ZraI GACGTC 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.