RchiOBHm_Chr1g0327201

Protein of unknown function (DUF667)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014497
Physical Location & Seq
Reverse (-)
15944430 .. 15947097
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 576 bp
ATGTTCAAGAACACATTCCAATCTGGGTTTCTGTCCATTCTATACAGCCTTGGGAGCAAACCTTTGCAGATATGGGATAAAGAAGTTGTCAATGGCCATATAAAGAGACCACAGGATGAAGACATACAATCCAATGTCCTTGAAATTGTTGGATCGAATATCCAGTCCACATACATTACTTGCCCTGCAGATCCATCAGTAACACTGAGTATAAAACTGCCGTTCCTTGTTATGATTGTGAAGAATCTGAAGAAATATTTCACATTTGAGATTCAAGTTCTGGATGATAAGAATGTCAGGCGACGTTTTCGAGCTTCCAATTTTCAAGCTGTCACTCGAGTGAAGCCGTATATCTGCACCATGCCACTGAGGATGGATGAGGGCTGGAATCAAATCCAGTTTAATCTGGCTGATTTTACCAGGAGAGCCTATGGAACAAACTATGTGGAGACATTGCGAGTTCAGGTTCATGCAAATTGTCGCCTGAGGAGGATATATTTCTCTGACCGCTTGTACTCTGAAGAGGAACTTCCTCCTGAATTTAAACTATACCTTCCAATGCAGCAGAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF667

Protein Analysis

191

Amino Acids

22.53

Weight (kDa)

9.38

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CFA20_dom PF05018 1 - 184 8.2e-91 CFA20 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12300
fragaria_vesca FvH4_7g03830
malus_domestica MD02G1276800.v1.1 MD07G1044300.v1.1
prunus_persica Prupe.2G043300_v2.0.a1 Prupe.2G043300_v2.0.a1
pyrus_communis pycom02g23710
rosa_chinensis RchiOBHm_Chr1g0327201
rosa_laevigata RLG00000030035
rosa_multiflora Rmu_sc0000972.1_g000014
rosa_roxburghii Rroxscaffold_4G00323070 Rroxscaffold_4G00323150
rosa_rugosa Rorug01G0064500
rosa_samantha Rh1AG081600 Rh1BG064800 Rh1DG086100
rosa_wichuraiana Rw1G006440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 508
AclWI GGATC 2 cut(s) 160, 185
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 2 cut(s) 269, 540
AfaI GTAC 1 cut(s) 515
AgsI TTSAA 4 cut(s) 7, 143, 275, 326
AjnI CCWGG 1 cut(s) 419
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 2 cut(s) 314, 329
AluI AGCT 2 cut(s) 314, 329
Alw26I GTCTC 2 cut(s) 100, 443
AlwI GGATC 2 cut(s) 160, 185
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 562
ApoI RAATTY 1 cut(s) 539
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp700I GAANNNNTTC 2 cut(s) 14, 257
AvaI CYCGRG 1 cut(s) 336
AxyI CCTNAGG 1 cut(s) 485
BalI TGGCCA 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 126
BccI CCATC 2 cut(s) 202, 367
BceAI ACGGC 2 cut(s) 205, 331
BciT130I CCWGG 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 100, 443
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 563
BlsI GCNGC 1 cut(s) 564
Bme1390I CCNGG 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 49
Bse1I ACTGG 2 cut(s) 163, 397
Bse21I CCTNAGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 452
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 4 cut(s) 121, 289, 378, 382
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 3 cut(s) 197, 359, 476
BseNI ACTGG 2 cut(s) 163, 397
BseRI GAGGAG 1 cut(s) 502
BsgI GTGCAG 1 cut(s) 340
BshFI GGCC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 336
BsmAI GTCTC 2 cut(s) 100, 443
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 336
Bsp143I GATC 2 cut(s) 152, 190
BspACI CCGC 1 cut(s) 508
BspANI GGCC 1 cut(s) 96
BspCNI CTCAG 3 cut(s) 198, 360, 477
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 2 cut(s) 160, 185
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 452
BsrI ACTGG 2 cut(s) 163, 397
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 2 cut(s) 152, 190
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 516
BstDEI CTNAG 3 cut(s) 206, 368, 485
BstF5I GGATG 4 cut(s) 121, 289, 378, 382
BstKTI GATC 2 cut(s) 155, 193
BstMAI GTCTC 2 cut(s) 100, 443
BstMBI GATC 2 cut(s) 152, 190
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 186
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 485
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 4 cut(s) 121, 289, 378, 382
BtsIMutI CAGTG 2 cut(s) 203, 365
Csp6I GTAC 1 cut(s) 514
CspCI CAANNNNNGTGG 2 cut(s) 426, 461
CviAII CATG 3 cut(s) 361, 470, 573
CviJI RGCY 8 cut(s) 48, 96, 314, 329, 346, 384, 410, 428
CviKI_1 RGCY 8 cut(s) 48, 96, 314, 329, 346, 384, 410, 428
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 3 cut(s) 206, 368, 485
DpnI GATC 2 cut(s) 154, 192
DpnII GATC 2 cut(s) 152, 190
DraI TTTAAA 1 cut(s) 544
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 269, 540
Eco81I CCTNAGG 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 3 cut(s) 364, 473, 576
FalI AAGNNNNNCTT 2 cut(s) 513, 545
FatI CATG 3 cut(s) 360, 469, 572
Fnu4HI GCNGC 1 cut(s) 563
FokI GGATG 4 cut(s) 128, 296, 385, 389
Fsp4HI GCNGC 1 cut(s) 563
GluI GCNGC 1 cut(s) 563
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 3 cut(s) 364, 473, 576
HinfI GANTC 3 cut(s) 244, 271, 388
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 3 cut(s) 249, 505, 520
Hpy188III TCNNGA 3 cut(s) 7, 281, 536
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 1 cut(s) 563
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 5 cut(s) 67, 188, 357, 473, 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 3 cut(s) 206, 368, 485
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 3 cut(s) 364, 473, 576
Kzo9I GATC 2 cut(s) 152, 190
LmnI GCTCC 1 cut(s) 54
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 2 cut(s) 199, 331
MalI GATC 2 cut(s) 154, 192
MboI GATC 2 cut(s) 152, 190
MboII GAAGA 4 cut(s) 131, 253, 262, 533
MflI RGATCY 1 cut(s) 190
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 4 cut(s) 144, 319, 475, 539
MluNI TGGCCA 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 7 cut(s) 363, 373, 480, 483, 517, 543, 561
Mox20I TGGCCA 1 cut(s) 96
MroXI GAANNNNTTC 2 cut(s) 14, 257
MscI TGGCCA 1 cut(s) 96
MseI TTAA 2 cut(s) 402, 543
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 421
MvaI CCWGG 1 cut(s) 421
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 2 cut(s) 152, 190
NlaIII CATG 3 cut(s) 364, 473, 576
NmuCI GTSAC 1 cut(s) 331
OliI CACNNNNGTG 1 cut(s) 338
PaeR7I CTCGAG 1 cut(s) 336
PdmI GAANNNNTTC 2 cut(s) 14, 257
PfeI GAWTC 3 cut(s) 244, 271, 388
PkrI GCNGC 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 419
PspGI CCWGG 1 cut(s) 419
PspXI VCTCGAGB 1 cut(s) 336
PstI CTGCAG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 402, 543
SatI GCNGC 1 cut(s) 563
Sau3AI GATC 2 cut(s) 152, 190
ScrFI CCNGG 1 cut(s) 421
SetI ASST 6 cut(s) 64, 307, 316, 331, 468, 555
SfcI CTRYAG 1 cut(s) 186
Sfr274I CTCGAG 1 cut(s) 336
SlaI CTCGAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 4 cut(s) 144, 319, 475, 539
SsiI CCGC 1 cut(s) 508
SspI AATATT 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 49
TaiI ACGT 1 cut(s) 307
TaqI TCGA 3 cut(s) 155, 310, 337
TasI AATT 4 cut(s) 144, 319, 475, 539
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 3 cut(s) 244, 271, 388
Tru1I TTAA 2 cut(s) 402, 543
Tru9I TTAA 2 cut(s) 402, 543
TscAI CASTG 2 cut(s) 210, 372
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 132, 458
TspRI CASTG 2 cut(s) 210, 372
XapI RAATTY 1 cut(s) 539
XhoI CTCGAG 1 cut(s) 336
XmnI GAANNNNTTC 2 cut(s) 14, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.