Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013879

Physical Location & Seq

Genomic Coordinates Forward (+)

25778622 .. 25778981

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTAATATCTTTTGCATTATACCAGTATTGGATTTTATGCATATTTTGTCTCTCTGGTGTGGTTTTCAATAGCATTTTGTTTGTTAGTTCTTGCCTTGTAAATGTTGTATATGATTCTTCTCGTCTGTGGAAGAGGATACATCTATTGGCTTTTGCCTTGACATTTGTTCTTAGTTATATAATTGAAGAACGTGTCTGTTACTTGACAATTTGTGACCAAGCCTATCCAAAGAAACTTGCCTTTCAGTATCTTAAAGATCTCAAGAATGAATTTGAGCATGTTGATGGAGCCCTGATTGAAACTGCTGCAAGACCGTATGCTTTCATTAAATTCGGTAGGTTTACTGCTATAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

119

Amino Acids

13.83

Weight (kDa)

8.28

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	56 - 113	9.8e-17	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52270 AT5G52270
fragaria_vesca	FvH4_6g47281
malus_domestica	MD01G1200300.v1.1 MD07G1268100.v1.1
prunus_persica	Prupe.2G293800_v2.0.a1
pyrus_communis	pycom07g24570
rosa_chinensis	RchiOBHm_Chr1g0333651 RchiOBHm_Chr5g0053861
rosa_roxburghii	Rroxscaffold_4G00317350
rosa_rugosa	Rorug02G0522400 Rorug06G0275000 Rorug07G0304600
rosa_samantha	Rh4AG111000 Rh6DG154600 Rh7AG307300 Rh7CG326300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	272, 332
AflIII	ACRYGT	1 cut(s)	193
AgsI	TTSAA	3 cut(s)	70, 188, 302
Alw26I	GTCTC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	2 cut(s)	272, 332
BanII	GRGCYC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	132
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	25
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	25
BssMI	GATC	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	173
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	132
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	3 cut(s)	152, 224, 293
CviKI_1	RGCY	3 cut(s)	152, 224, 293
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	295
EcoT22I	ATGCAT	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	1 cut(s)	284
FatI	CATG	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	309
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	284
HinfI	GANTC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	17, 42, 311
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	3 cut(s)	38, 42, 308
Lsp1109I	GCAGC	1 cut(s)	295
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	200, 215
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	111, 145, 200
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	4 cut(s)	183, 210, 272, 332
MnlI	CCTC	1 cut(s)	129
Mph1103I	ATGCAT	1 cut(s)	44
MseI	TTAA	3 cut(s)	255, 330, 358
MslI	CAYNNNNRTG	1 cut(s)	285
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	44
NspI	RCATGY	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	255, 330, 358
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	2 cut(s)	196, 344
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	183, 210, 272, 332
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	1 cut(s)	196
TasI	AATT	4 cut(s)	183, 210, 272, 332
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	255, 330, 358
Tru9I	TTAA	3 cut(s)	255, 330, 358
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	285, 316
XapI	RAATTY	2 cut(s)	272, 332
XceI	RCATGY	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.