RchiOBHm_Chr1g0333961

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012674
Physical Location & Seq
Reverse (-)
26078107 .. 26078586
480 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
ATGCAAGCAGCACTGGCGGCCATAGTAGCCCATTCTGTGATGCTCTCAGCTCACTCATCCCCCTCTCTCTTTGCCCAAATTCAAACCCGTAACCCCTGCCCAACTATCCACTCCGCCTTCCACAGTGTCTCTCTCAAGCTCCCCATCAAATCCCAATCCCAATCCATGTCTCTCGCCGCCGCCGCCTCCCCCAAGCCCCTCACGGTCGTCGCTGCCACCAAGAAGGTTGTTGCCATCCTTAAGGGCACTTCAACCGTCGAAGGTGTCGTCACCTTGACCCAAGACGATGACGACACTTCATCTTGCCTTCCTCATCAATTGCTTCTTGAATGTTTCTTACATGGGCTATTGTTTGTTACTCTGAAATTGGTTTTTGTTACTGTCGAAGGCGTCTTCAATCTTGATTTAGGCTGCTCAGCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

141

Amino Acids

14.8

Weight (kDa)

6.99

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 17, 114, 177, 180, 183
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 390
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 4 cut(s) 83, 252, 329, 397
AluBI AGCT 3 cut(s) 50, 139, 419
AluI AGCT 3 cut(s) 50, 139, 419
Alw26I GTCTC 2 cut(s) 133, 174
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 8, 212, 411
ApoI RAATTY 1 cut(s) 78
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
AsuHPI GGTGA 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 385
BbvI GCAGC 3 cut(s) 20, 199, 398
BccI CCATC 2 cut(s) 152, 242
BcoDI GTCTC 2 cut(s) 133, 174
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 412
BlpI GCTNAGC 1 cut(s) 415
BlsI GCNGC 7 cut(s) 10, 19, 178, 181, 184, 214, 413
BmsI GCATC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 385
Bpu1102I GCTNAGC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 56, 234
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 248
BseXI GCAGC 3 cut(s) 20, 199, 398
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 133, 174
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 248
Bsp1720I GCTNAGC 1 cut(s) 415
BspACI CCGC 5 cut(s) 17, 114, 177, 180, 183
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 390
Bst4CI ACNGT 4 cut(s) 125, 205, 256, 382
BstACI GRCGYC 1 cut(s) 390
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 46, 415
BstF5I GGATG 2 cut(s) 56, 234
BstMAI GTCTC 2 cut(s) 133, 174
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 4 cut(s) 14, 17, 26, 182
BstSLI GKGCMC 1 cut(s) 248
BstV1I GCAGC 3 cut(s) 20, 199, 398
BstV2I GAAGAC 1 cut(s) 385
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 56, 234
BtsIMutI CAGTG 2 cut(s) 11, 130
Cac8I GCNNGC 1 cut(s) 6
CseI GACGC 1 cut(s) 379
CviAII CATG 2 cut(s) 166, 341
CviJI RGCY 8 cut(s) 20, 29, 50, 139, 196, 346, 411, 419
CviKI_1 RGCY 8 cut(s) 20, 29, 50, 139, 196, 346, 411, 419
DdeI CTNAG 2 cut(s) 46, 415
EaeI YGGCCR 1 cut(s) 18
EciI GGCGGA 1 cut(s) 103
FaeI CATG 2 cut(s) 169, 344
FaiI YATR 3 cut(s) 23, 167, 342
FatI CATG 2 cut(s) 165, 340
Fnu4HI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 412
FokI GGATG 2 cut(s) 43, 221
Fsp4HI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 412
GluI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 412
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 2 cut(s) 169, 344
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 2 cut(s) 326, 401
Hpy99I CGWCG 2 cut(s) 212, 260
HpyAV CCTTC 5 cut(s) 127, 217, 254, 317, 380
HpyCH4III ACNGT 4 cut(s) 125, 205, 256, 382
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 17, 26, 182
HpyF3I CTNAG 2 cut(s) 46, 415
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 2 cut(s) 169, 344
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 1 cut(s) 109
Lsp1109I GCAGC 3 cut(s) 20, 199, 398
LweI GCATC 1 cut(s) 30
MaeIII GTNAC 4 cut(s) 89, 268, 355, 376
MboII GAAGA 1 cut(s) 385
MfeI CAATTG 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 3 cut(s) 78, 317, 365
MnlI CCTC 4 cut(s) 73, 196, 209, 321
MseI TTAA 1 cut(s) 240
MspCI CTTAAG 1 cut(s) 239
MunI CAATTG 1 cut(s) 317
MwoI GCNNNNNNNGC 4 cut(s) 14, 17, 26, 182
NlaIII CATG 2 cut(s) 169, 344
NmuCI GTSAC 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PkrI GCNGC 7 cut(s) 10, 19, 178, 181, 184, 214, 413
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 412
SduI GDGCHC 1 cut(s) 248
SetI ASST 6 cut(s) 52, 141, 228, 265, 275, 421
SfaNI GCATC 1 cut(s) 30
SmlI CTYRAG 2 cut(s) 134, 239
SmoI CTYRAG 2 cut(s) 134, 239
Sse9I AATT 3 cut(s) 78, 317, 365
SsiI CCGC 5 cut(s) 17, 114, 177, 180, 183
TaaI ACNGT 4 cut(s) 125, 205, 256, 382
TaqI TCGA 2 cut(s) 258, 384
TasI AATT 3 cut(s) 78, 317, 365
TauI GCSGC 4 cut(s) 20, 179, 182, 185
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 18, 130
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 3 cut(s) 8, 212, 411
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 2 cut(s) 18, 130
Vha464I CTTAAG 1 cut(s) 239
XapI RAATTY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.