Rh2AG347500

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012674
Physical Location & Seq
Forward (+)
51081607 .. 51082149
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG347500.1

Sequence Viewer

Length: 348 bp
ATGCAAGCAACACTGGCGGCCATGGCAGCCCACTCTGTGATGCTCTCAGCTTACTCATCCCCCACTTTCTTCGCCCAAATTCAAACCCCTAACCCCCGCCCAACTCTCCACTCCGCCTTCCACGACGTCTCTCTCAAGCTCCCCATGAAATCCCAATCCCAATCCCAATCCATGTCTCTCACCGCCGCCGCCGCCGCCGCAGCCCCCAAGCCCCTTACGGTCGTCACTGCCACCAAGAACGTTGTTGCCGTCCTTAAGGGCACTTCAACCGTTGAAGGTGTCGTCACCTTGACCCAAGACGATGACGGCACTAGCTTCGTCTTGCCTTCCTCATCAGTTGCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

115

Amino Acids

11.81

Weight (kDa)

8.16

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AciI CCGC 9 cut(s) 17, 97, 114, 183, 186, 189, 192, 195, 198
AclI AACGTT 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 37
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 83, 267, 275
AluBI AGCT 3 cut(s) 50, 139, 315
AluI AGCT 3 cut(s) 50, 139, 315
Alw26I GTCTC 2 cut(s) 133, 180
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 26, 200
ApoI RAATTY 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 172, 277
BaeGI GKGCMC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 38, 212
BceAI ACGGC 2 cut(s) 233, 322
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BcoDI GTCTC 2 cut(s) 133, 180
BfaI CTAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 254
BisI GCNGC 8 cut(s) 18, 27, 186, 189, 192, 195, 198, 201
BlsI GCNGC 8 cut(s) 19, 28, 187, 190, 193, 196, 199, 202
BmsI GCATC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 2 cut(s) 38, 212
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 133, 180
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 263
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 9 cut(s) 17, 97, 114, 183, 186, 189, 192, 195, 198
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 254
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 220, 271
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 56
BstMAI GTCTC 2 cut(s) 133, 180
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 7 cut(s) 14, 23, 26, 191, 194, 197, 200
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 2 cut(s) 38, 212
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 11, 225
Cac8I GCNNGC 1 cut(s) 6
CviAII CATG 3 cut(s) 22, 145, 172
CviJI RGCY 7 cut(s) 20, 29, 50, 139, 203, 211, 315
CviKI_1 RGCY 7 cut(s) 20, 29, 50, 139, 203, 211, 315
DdeI CTNAG 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 3 cut(s) 25, 148, 175
FaiI YATR 3 cut(s) 23, 146, 173
FatI CATG 3 cut(s) 21, 144, 171
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 8 cut(s) 18, 27, 186, 189, 192, 195, 198, 201
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 8 cut(s) 18, 27, 186, 189, 192, 195, 198, 201
FspBI CTAG 1 cut(s) 312
GluI GCNGC 8 cut(s) 18, 27, 186, 189, 192, 195, 198, 201
HaeIII GGCC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 25, 148, 175
HphI GGTGA 2 cut(s) 172, 277
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 127, 269, 336
HpyCH4III ACNGT 2 cut(s) 220, 271
HpyCH4IV ACGT 2 cut(s) 126, 240
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 23, 26, 191, 194, 197, 200
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 2 cut(s) 126, 240
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 25, 148, 175
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 2 cut(s) 38, 212
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 312
MaeII ACGT 2 cut(s) 126, 240
MaeIII GTNAC 2 cut(s) 223, 283
MboII GAAGA 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 1 cut(s) 78
MnlI CCTC 1 cut(s) 340
MseI TTAA 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 254
MwoI GCNNNNNNNGC 7 cut(s) 14, 23, 26, 191, 194, 197, 200
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 3 cut(s) 25, 148, 175
NmuCI GTSAC 2 cut(s) 223, 283
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PkrI GCNGC 8 cut(s) 19, 28, 187, 190, 193, 196, 199, 202
Psp1406I AACGTT 1 cut(s) 240
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 8 cut(s) 18, 27, 186, 189, 192, 195, 198, 201
SduI GDGCHC 1 cut(s) 263
SetI ASST 7 cut(s) 52, 129, 141, 243, 280, 290, 317
SfaNI GCATC 1 cut(s) 30
SmlI CTYRAG 2 cut(s) 134, 254
SmoI CTYRAG 2 cut(s) 134, 254
Sse9I AATT 1 cut(s) 78
SsiI CCGC 9 cut(s) 17, 97, 114, 183, 186, 189, 192, 195, 198
SspMI CTAG 1 cut(s) 312
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 220, 271
TaiI ACGT 2 cut(s) 129, 243
TasI AATT 1 cut(s) 78
TauI GCSGC 6 cut(s) 20, 188, 191, 194, 197, 200
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 2 cut(s) 18, 232
TseFI GTSAC 2 cut(s) 223, 283
TseI GCWGC 2 cut(s) 26, 200
Tsp45I GTSAC 2 cut(s) 223, 283
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 2 cut(s) 18, 232
Vha464I CTTAAG 1 cut(s) 254
XapI RAATTY 1 cut(s) 78
XspI CTAG 1 cut(s) 312
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.