Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012674

Physical Location & Seq

Genomic Coordinates Forward (+)

33577037 .. 33578522

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG201600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCACGCAGCACTGGCGGCCATGGCAGTCCACTCTGTGATGCTCTCAACTTACTCATCCCCCACTCTCTTCGCCCAAATTCAAACCCCTAACCCCCGCCCAACTCTCCACTCCGCCTTTGACGGCGTCTCTCTCAATCTCCCCATTAAATCTCAATCCCAATCCATGTCTCTCGCCGCCGCCGCATCCGCCTCCTCCAAGCCCCTCACCGTCGTCGCTGCCACCAAGAAGGTCGTTGTAGTCCTTAAGGGCACTTCAACAGTCGAAGGTGTCGTCACCTTGACTCAAGACGATGACGGCACTTCGTCTTGCCTTCCTCATCAGTTGCTTCTTGAATGTTTAATTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

116

Amino Acids

11.97

Weight (kDa)

6.89

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012674)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333961
rosa_laevigata	RLG00000014578 RLG00000032726
rosa_multiflora	Rmu_sc0001485.1_g000001 Rmu_sc0002561.1_g000001 Rmu_sc0003629.1_g000068 Rmu_sc0006452.1_g000011 Rmu_sc0010342.1_g000010 Rmu_sc0019424.1_g000001 Rmu_ssc0000361.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046480
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh2AG347500 Rh4BG367500 Rh4DG383900 Rh5CG263600 Rh5DG139100 Rh6AG196400 Rh6CG201600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	17, 97, 114, 177, 180, 183, 189
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	83, 258, 335
Alw26I	GTCTC	2 cut(s)	133, 174
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	8, 218
ApoI	RAATTY	1 cut(s)	78
ArsI	GACNNNNNNTTYG	2 cut(s)	258, 290
AsuHPI	GGTGA	2 cut(s)	199, 268
BaeGI	GKGCMC	1 cut(s)	254
BbvI	GCAGC	2 cut(s)	20, 205
BceAI	ACGGC	2 cut(s)	139, 313
BcoDI	GTCTC	2 cut(s)	133, 174
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 219
BlsI	GCNGC	6 cut(s)	10, 19, 178, 181, 184, 220
BmsI	GCATC	2 cut(s)	30, 194
BpuEI	CTTGAG	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	56, 185
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	184
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	20, 205
BshFI	GGCC	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	133, 174
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	7 cut(s)	17, 97, 114, 177, 180, 183, 189
BspANI	GGCC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	211, 262
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	56, 185
BstMAI	GTCTC	2 cut(s)	133, 174
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 182, 188
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	20, 205
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	56, 185
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	115
CviAII	CATG	2 cut(s)	22, 166
CviJI	RGCY	2 cut(s)	20, 202
CviKI_1	RGCY	2 cut(s)	20, 202
DraIII	CACNNNGTG	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
EciI	GGCGGA	2 cut(s)	103, 178
Eco130I	CCWWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	2 cut(s)	25, 169
FaiI	YATR	2 cut(s)	23, 167
FatI	CATG	2 cut(s)	21, 165
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 219
FokI	GGATG	2 cut(s)	43, 172
Fsp4HI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 219
GluI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 219
HaeIII	GGCC	1 cut(s)	20
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	25, 169
HinfI	GANTC	1 cut(s)	283
HphI	GGTGA	2 cut(s)	199, 268
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188III	TCNNGA	2 cut(s)	287, 332
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	2 cut(s)	215, 218
HpyAV	CCTTC	3 cut(s)	223, 260, 323
HpyCH4III	ACNGT	2 cut(s)	211, 262
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 182, 188
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	25, 169
Lsp1109I	GCAGC	2 cut(s)	20, 205
LweI	GCATC	2 cut(s)	30, 194
MaeIII	GTNAC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	2 cut(s)	78, 342
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	202, 205, 215, 327
MseI	TTAA	3 cut(s)	147, 246, 341
MspCI	CTTAAG	1 cut(s)	245
MwoI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 182, 188
NcoI	CCATGG	1 cut(s)	21
NlaIII	CATG	2 cut(s)	25, 169
NmuCI	GTSAC	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	6 cut(s)	10, 19, 178, 181, 184, 220
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PsyI	GACNNNGTC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	147, 246, 341
SatI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 219
SchI	GAGTC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	3 cut(s)	234, 271, 281
SfaNI	GCATC	2 cut(s)	30, 194
SmlI	CTYRAG	2 cut(s)	245, 285
SmoI	CTYRAG	2 cut(s)	245, 285
Sse9I	AATT	2 cut(s)	78, 342
SsiI	CCGC	7 cut(s)	17, 97, 114, 177, 180, 183, 189
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	211, 262
TaqI	TCGA	1 cut(s)	264
TasI	AATT	2 cut(s)	78, 342
TauI	GCSGC	4 cut(s)	20, 179, 182, 185
Tru1I	TTAA	3 cut(s)	147, 246, 341
Tru9I	TTAA	3 cut(s)	147, 246, 341
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	8, 218
Tsp45I	GTSAC	1 cut(s)	274
TspRI	CASTG	1 cut(s)	18
Tth111I	GACNNNGTC	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.