Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012674

Physical Location & Seq

Genomic Coordinates Forward (+)

35241810 .. 35243031

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG196400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCAAGCAGCACTGGCGGCCATGGCAGTCCACTCTGTGATGCTCTTAACTTACTCATCCCCCACTCTCTTCGCCCAAGTTCAAACCCCTAACCCCCGCCCAACTCTCCACTCCGCCTTCGACAGCGTCTCTCTCAAGCTCCCCATCAAATCTCAATCCCAATCCATGTCTCTCGCCGCCGCCGCCGCCTCCCCCAAGTCCCTCACCGTCGTCGTTGCCACCAAGAAGGTCGTTGTCGTCCTTAAGGGCACTTCAACCGTCGAAGGTGTCGTCACCTTGACTCAAAACGATGACGGAACTTCATCTTGCCTTCCTCATCAGTTGCTTCTTGAATGTTTAATTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

115

Amino Acids

11.96

Weight (kDa)

8.71

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012674)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333961
rosa_laevigata	RLG00000014578 RLG00000032726
rosa_multiflora	Rmu_sc0001485.1_g000001 Rmu_sc0002561.1_g000001 Rmu_sc0003629.1_g000068 Rmu_sc0006452.1_g000011 Rmu_sc0010342.1_g000010 Rmu_sc0019424.1_g000001 Rmu_ssc0000361.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046480
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh2AG347500 Rh4BG367500 Rh4DG383900 Rh5CG263600 Rh5DG139100 Rh6AG196400 Rh6CG201600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	17, 97, 114, 177, 180, 183, 186
AcoI	YGGCCR	1 cut(s)	18
AdeI	CACNNNGTG	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	83, 255, 332
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	133, 174
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsuHPI	GGTGA	2 cut(s)	196, 265
BaeGI	GKGCMC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	152
BcoDI	GTCTC	2 cut(s)	133, 174
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 186
BlsI	GCNGC	6 cut(s)	10, 19, 178, 181, 184, 187
BmsI	GCATC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	133, 174
BsmBI	CGTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	7 cut(s)	17, 97, 114, 177, 180, 183, 186
BspANI	GGCC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	2 cut(s)	208, 259
Bst6I	CTCTTC	1 cut(s)	74
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	56
BstMAI	GTCTC	2 cut(s)	133, 174
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 182, 185
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	115
CviAII	CATG	2 cut(s)	22, 166
CviJI	RGCY	2 cut(s)	20, 139
CviKI_1	RGCY	2 cut(s)	20, 139
DraIII	CACNNNGTG	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	2 cut(s)	25, 169
FaiI	YATR	2 cut(s)	23, 167
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	21, 165
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 186
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 186
GluI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 186
HaeIII	GGCC	1 cut(s)	20
HgaI	GACGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	25, 169
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	2 cut(s)	196, 265
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	3 cut(s)	212, 215, 263
HpyAV	CCTTC	4 cut(s)	127, 220, 257, 320
HpyCH4III	ACNGT	2 cut(s)	208, 259
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 182, 185
Hsp92II	CATG	2 cut(s)	25, 169
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	271
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	199, 212, 324
MseI	TTAA	3 cut(s)	47, 243, 338
MspCI	CTTAAG	1 cut(s)	242
MwoI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 182, 185
NcoI	CCATGG	1 cut(s)	21
NlaIII	CATG	2 cut(s)	25, 169
NmuCI	GTSAC	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	6 cut(s)	10, 19, 178, 181, 184, 187
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PsyI	GACNNNGTC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	47, 243, 338
SatI	GCNGC	6 cut(s)	9, 18, 177, 180, 183, 186
SchI	GAGTC	1 cut(s)	274
SduI	GDGCHC	1 cut(s)	251
SetI	ASST	4 cut(s)	141, 231, 268, 278
SfaNI	GCATC	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	134, 242
SmoI	CTYRAG	2 cut(s)	134, 242
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	7 cut(s)	17, 97, 114, 177, 180, 183, 186
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	208, 259
TaqI	TCGA	2 cut(s)	120, 261
TasI	AATT	1 cut(s)	339
TauI	GCSGC	5 cut(s)	20, 179, 182, 185, 188
Tru1I	TTAA	3 cut(s)	47, 243, 338
Tru9I	TTAA	3 cut(s)	47, 243, 338
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	18
Tth111I	GACNNNGTC	1 cut(s)	125
Vha464I	CTTAAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.