Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002561.1

Orthogroup ID

OG0012674

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 876

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atcttcattttcctcctcctccctacagattggggtaagttcccatttatacccagtcttgagtcgattgaaatttacacagaatggggtggattatcatcatcatcatcatcatcatcatcttcatttccccttctgcaccatccaacgcaagcagcactggcggccatggcagcccactctgtgatgctctcagctcactcatcccccactctcttcgcccaaattcaaacccctaaccccctcccaactctccacttcgccttccacggcgtctctctcaagctccccatcaaatcccaatcccaatccatgtctctcgccgccgccgcctcccccaagcccctcacggtcgtcgctgccaccaagagggtcgttgccgtccttaagggcacttcaaccgtcgaaggtgtcgtcaccttgacccaagacgatgacggcacttcgtcttgccttcctcatcagatgcttcttgaatgtttaattgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

163

Amino Acids

17.21

Weight (kDa)

6.38

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012674)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333961
rosa_laevigata	RLG00000014578 RLG00000032726
rosa_multiflora	Rmu_sc0001485.1_g000001 Rmu_sc0002561.1_g000001 Rmu_sc0003629.1_g000068 Rmu_sc0006452.1_g000011 Rmu_sc0010342.1_g000010 Rmu_sc0019424.1_g000001 Rmu_ssc0000361.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046480
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh2AG347500 Rh4BG367500 Rh4DG383900 Rh5CG263600 Rh5DG139100 Rh6AG196400 Rh6CG201600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	164, 324, 327, 330
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	72, 225
AcyI	GRCGYC	1 cut(s)	273
AdeI	CACNNNGTG	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	4 cut(s)	71, 230, 399, 476
AluBI	AGCT	2 cut(s)	197, 286
AluI	AGCT	2 cut(s)	197, 286
Alw26I	GTCTC	2 cut(s)	280, 321
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	155, 173, 359
ApoI	RAATTY	2 cut(s)	72, 225
ArsI	GACNNNNNNTTYG	2 cut(s)	399, 431
AsuHPI	GGTGA	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	395
BbvI	GCAGC	3 cut(s)	167, 185, 346
BccI	CCATC	2 cut(s)	150, 299
BceAI	ACGGC	3 cut(s)	286, 365, 454
BcoDI	GTCTC	2 cut(s)	280, 321
BfmI	CTRYAG	1 cut(s)	24
BfrI	CTTAAG	1 cut(s)	386
BisI	GCNGC	7 cut(s)	156, 165, 174, 324, 327, 330, 360
BlsI	GCNGC	7 cut(s)	157, 166, 175, 325, 328, 331, 361
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	177, 456
BmuI	ACTGGG	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	80, 266
BsaBI	GATNNNNATC	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	168, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	54, 165
Bse8I	GATNNNNATC	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	168, 268
BseGI	GGATG	2 cut(s)	142, 203
BseJI	GATNNNNATC	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	54, 165
BseRI	GAGGAG	2 cut(s)	5, 8
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	3 cut(s)	167, 185, 346
BsgI	GTGCAG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	2 cut(s)	280, 321
BsmBI	CGTCTC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	4 cut(s)	164, 324, 327, 330
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	206
BspTI	CTTAAG	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	54, 165
BssECI	CCNNGG	2 cut(s)	168, 268
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	352, 403
Bst6I	CTCTTC	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	193
BstDSI	CCRYGG	2 cut(s)	168, 268
BstF5I	GGATG	2 cut(s)	142, 203
BstMAI	GTCTC	2 cut(s)	280, 321
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 164, 170, 173, 329
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	395
BstV1I	GCAGC	3 cut(s)	167, 185, 346
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	2 cut(s)	168, 268
BtsCI	GGATG	2 cut(s)	142, 203
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	153
CseI	GACGC	1 cut(s)	262
CviAII	CATG	2 cut(s)	169, 313
CviJI	RGCY	5 cut(s)	167, 176, 197, 286, 343
CviKI_1	RGCY	5 cut(s)	167, 176, 197, 286, 343
DdeI	CTNAG	1 cut(s)	193
DraIII	CACNNNGTG	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	172, 316
FaiI	YATR	3 cut(s)	50, 170, 314
FatI	CATG	2 cut(s)	168, 312
Fnu4HI	GCNGC	7 cut(s)	156, 165, 174, 324, 327, 330, 360
FokI	GGATG	2 cut(s)	129, 190
Fsp4HI	GCNGC	7 cut(s)	156, 165, 174, 324, 327, 330, 360
GluI	GCNGC	7 cut(s)	156, 165, 174, 324, 327, 330, 360
HaeIII	GGCC	1 cut(s)	167
HgaI	GACGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	172, 316
HinfI	GANTC	1 cut(s)	62
HphI	GGTGA	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	465
Hpy188III	TCNNGA	2 cut(s)	59, 473
Hpy99I	CGWCG	2 cut(s)	359, 407
HpyAV	CCTTC	4 cut(s)	143, 274, 401, 464
HpyCH4III	ACNGT	2 cut(s)	352, 403
HpyCH4V	TGCA	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 164, 170, 173, 329
HpyF3I	CTNAG	1 cut(s)	193
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	172, 316
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	2 cut(s)	67, 146
Lsp1109I	GCAGC	3 cut(s)	167, 185, 346
LweI	GCATC	2 cut(s)	177, 456
MaeIII	GTNAC	1 cut(s)	415
MboII	GAAGA	2 cut(s)	114, 208
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	3 cut(s)	72, 225, 483
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	8 cut(s)	23, 26, 29, 254, 343, 356, 363, 468
MseI	TTAA	2 cut(s)	387, 482
MspCI	CTTAAG	1 cut(s)	386
MwoI	GCNNNNNNNGC	5 cut(s)	161, 164, 170, 173, 329
NcoI	CCATGG	1 cut(s)	168
NlaIII	CATG	2 cut(s)	172, 316
NmuCI	GTSAC	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PkrI	GCNGC	7 cut(s)	157, 166, 175, 325, 328, 331, 361
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	387, 482
SatI	GCNGC	7 cut(s)	156, 165, 174, 324, 327, 330, 360
SchI	GAGTC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	4 cut(s)	199, 288, 412, 422
SfaNI	GCATC	2 cut(s)	177, 456
SfcI	CTRYAG	1 cut(s)	24
SmlI	CTYRAG	3 cut(s)	59, 281, 386
SmoI	CTYRAG	3 cut(s)	59, 281, 386
Sse9I	AATT	3 cut(s)	72, 225, 483
SsiI	CCGC	4 cut(s)	164, 324, 327, 330
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	352, 403
TaqI	TCGA	2 cut(s)	65, 405
TasI	AATT	3 cut(s)	72, 225, 483
TauI	GCSGC	4 cut(s)	167, 326, 329, 332
Tru1I	TTAA	2 cut(s)	387, 482
Tru9I	TTAA	2 cut(s)	387, 482
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	155, 173, 359
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	165
Vha464I	CTTAAG	1 cut(s)	386
XapI	RAATTY	2 cut(s)	72, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.