RLG00000014578

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012674
Physical Location & Seq
Reverse (-)
54969252 .. 54969857
606 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014578

Sequence Viewer

Length: 495 bp
ATGCAAGCAGCACTGGCGGCCATGGCAGCCCACTCTGTGATGCTCTCAGCTTACTCATCCCCCACTCTCTTCGCCCAAATTCAAACCCCTAACCCTCGCCCAACTCTCCACTCCGCCTTCCACGGCGTCTCTCTCAAACTCCCTATTAAATCCCAATCCCAATCCATGTCTCTTGCCACCACCGCCCCTAAGCCCCTCACGGTCGTCGCTGCCACCAAGAAGGTCGTTGCCGTCCTTAAGGGCACTTCAACAGTCGAAGGTGTCGTCACCTTGACCCAAGACGATGACGGCACTTCGTCTTGCCTTCCTCATCAGTTGCTTCCTGAATGCGTCTTCAATCTTGATTTAGGCTGCTCAGCTCTGAAATTTGCTCATGTTTCTGGGTTTTGGGTGTTTAATGATGCGTTTTCACCATTGGTTGTAGTTGGGTTTGTGTGTAATTCTGGTTTGCTTTCGCAAAATGCTTACTTGCTTGTTCTTGATTATTACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

165

Amino Acids

17.37

Weight (kDa)

6.94

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 17, 114, 183
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 2 cut(s) 78, 365
AcyI GRCGYC 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 37
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 3 cut(s) 83, 249, 337
AluBI AGCT 2 cut(s) 50, 359
AluI AGCT 2 cut(s) 50, 359
Alw26I GTCTC 2 cut(s) 133, 174
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 8, 26, 209, 351
ApoI RAATTY 2 cut(s) 78, 365
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AsuHPI GGTGA 2 cut(s) 259, 402
BaeGI GKGCMC 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 325
BbvI GCAGC 4 cut(s) 20, 38, 196, 338
BceAI ACGGC 3 cut(s) 139, 215, 304
BcoDI GTCTC 2 cut(s) 133, 174
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 5 cut(s) 9, 18, 27, 210, 352
BlpI GCTNAGC 1 cut(s) 355
BlsI GCNGC 5 cut(s) 10, 19, 28, 211, 353
BmsI GCATC 2 cut(s) 30, 391
BpiI GAAGAC 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 355
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 21, 121
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 21, 121
BseGI GGATG 1 cut(s) 56
BseMII CTCAG 2 cut(s) 60, 369
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 4 cut(s) 20, 38, 196, 338
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 133, 174
BsmBI CGTCTC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 245
Bsp1720I GCTNAGC 1 cut(s) 355
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 17, 114, 183
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 59, 368
BspTI CTTAAG 1 cut(s) 236
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 21, 121
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 202, 253
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 46, 189, 355
BstDSI CCRYGG 2 cut(s) 21, 121
BstF5I GGATG 1 cut(s) 56
BstMAI GTCTC 2 cut(s) 133, 174
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 5 cut(s) 14, 17, 23, 26, 182
BstNSI RCATGY 1 cut(s) 493
BstSLI GKGCMC 1 cut(s) 245
BstV1I GCAGC 4 cut(s) 20, 38, 196, 338
BstV2I GAAGAC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 2 cut(s) 21, 121
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 6
CseI GACGC 2 cut(s) 115, 319
CviAII CATG 4 cut(s) 22, 166, 374, 490
CviJI RGCY 6 cut(s) 20, 29, 50, 193, 351, 359
CviKI_1 RGCY 6 cut(s) 20, 29, 50, 193, 351, 359
DdeI CTNAG 3 cut(s) 46, 189, 355
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 4 cut(s) 25, 169, 377, 493
FaiI YATR 4 cut(s) 23, 167, 375, 491
FatI CATG 4 cut(s) 21, 165, 373, 489
Fnu4HI GCNGC 5 cut(s) 9, 18, 27, 210, 352
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 5 cut(s) 9, 18, 27, 210, 352
GluI GCNGC 5 cut(s) 9, 18, 27, 210, 352
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 2 cut(s) 115, 319
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 4 cut(s) 25, 169, 377, 493
HphI GGTGA 2 cut(s) 259, 402
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 3 cut(s) 323, 341, 479
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 127, 214, 251, 314
HpyCH4III ACNGT 2 cut(s) 202, 253
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 17, 23, 26, 182
HpyF3I CTNAG 3 cut(s) 46, 189, 355
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 4 cut(s) 25, 169, 377, 493
LpnPI CCDG 3 cut(s) 336, 366, 429
Lsp1109I GCAGC 4 cut(s) 20, 38, 196, 338
LweI GCATC 2 cut(s) 30, 391
MaeIII GTNAC 1 cut(s) 265
MboII GAAGA 2 cut(s) 61, 325
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 3 cut(s) 78, 365, 439
MnlI CCTC 3 cut(s) 105, 206, 318
MseI TTAA 3 cut(s) 147, 237, 396
MspCI CTTAAG 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 332
MwoI GCNNNNNNNGC 5 cut(s) 14, 17, 23, 26, 182
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 4 cut(s) 25, 169, 377, 493
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 493
PciI ACATGT 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 1 cut(s) 332
PkrI GCNGC 5 cut(s) 10, 19, 28, 211, 353
PscI ACATGT 1 cut(s) 489
SaqAI TTAA 3 cut(s) 147, 237, 396
SatI GCNGC 5 cut(s) 9, 18, 27, 210, 352
SduI GDGCHC 1 cut(s) 245
SetI ASST 5 cut(s) 52, 225, 262, 272, 361
SfaNI GCATC 2 cut(s) 30, 391
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 3 cut(s) 78, 365, 439
SsiI CCGC 3 cut(s) 17, 114, 183
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 202, 253
TaqI TCGA 1 cut(s) 255
TasI AATT 3 cut(s) 78, 365, 439
TauI GCSGC 1 cut(s) 20
Tru1I TTAA 3 cut(s) 147, 237, 396
Tru9I TTAA 3 cut(s) 147, 237, 396
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 4 cut(s) 8, 26, 209, 351
Tsp45I GTSAC 1 cut(s) 265
TspRI CASTG 1 cut(s) 18
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 2 cut(s) 78, 365
XceI RCATGY 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.