Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001485.1

Orthogroup ID

OG0012674

Physical Location & Seq

Genomic Coordinates Reverse (-)

3647 .. 3991

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001485.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgcaagcagcactggcggccatggcaactcactctgtgatgctctcaacttactcatctcccactctcttcgcccaaattcaaacccctaacccccgcccaactctccactccaccttccacggcgtctctctcaagctccccatcaaatcccaatcccaatccatgtctctcgccgcagccgccgcccctaagcccctctcggtcatcgctgccaccaagaaagtcgttgtcgtccttaagggcacttcaaccgtcgaaggtgtcgtcaccttgacccatgacgatgacgacacttcgtcttgccttcctcatcagttgcttcttgaatgtttaattgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

114

Amino Acids

11.94

Weight (kDa)

7.86

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012674)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333961
rosa_laevigata	RLG00000014578 RLG00000032726
rosa_multiflora	Rmu_sc0001485.1_g000001 Rmu_sc0002561.1_g000001 Rmu_sc0003629.1_g000068 Rmu_sc0006452.1_g000011 Rmu_sc0010342.1_g000010 Rmu_sc0019424.1_g000001 Rmu_ssc0000361.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046480
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh2AG347500 Rh4BG367500 Rh4DG383900 Rh5CG263600 Rh5DG139100 Rh6AG196400 Rh6CG201600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	17, 97, 177, 183, 186
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	83, 252, 329
AhdI	GACNNNNNGTC	1 cut(s)	298
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	133, 174
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	3 cut(s)	8, 179, 212
ApoI	RAATTY	1 cut(s)	78
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AsuHPI	GGTGA	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	20, 191, 199
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	133, 174
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	7 cut(s)	9, 18, 177, 180, 183, 186, 213
BlsI	GCNGC	7 cut(s)	10, 19, 178, 181, 184, 187, 214
BmeRI	GACNNNNNGTC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	21, 121
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	21, 121
BseNI	ACTGG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	20, 191, 199
BshFI	GGCC	1 cut(s)	20
BsmAI	GTCTC	2 cut(s)	133, 174
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	5 cut(s)	17, 97, 177, 183, 186
BspANI	GGCC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	21, 121
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	126
BstAFI	CTTAAG	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	2 cut(s)	21, 121
BstMAI	GTCTC	2 cut(s)	133, 174
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 182, 185
BstSLI	GKGCMC	1 cut(s)	248
BstV1I	GCAGC	3 cut(s)	20, 191, 199
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	2 cut(s)	21, 121
BtgZI	GCGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	115
CviAII	CATG	3 cut(s)	22, 166, 281
CviJI	RGCY	4 cut(s)	20, 139, 182, 196
CviKI_1	RGCY	4 cut(s)	20, 139, 182, 196
DdeI	CTNAG	1 cut(s)	192
DraIII	CACNNNGTG	1 cut(s)	37
DriI	GACNNNNNGTC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	3 cut(s)	25, 169, 284
FaiI	YATR	3 cut(s)	23, 167, 282
FatI	CATG	3 cut(s)	21, 165, 280
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	7 cut(s)	9, 18, 177, 180, 183, 186, 213
Fsp4HI	GCNGC	7 cut(s)	9, 18, 177, 180, 183, 186, 213
GluI	GCNGC	7 cut(s)	9, 18, 177, 180, 183, 186, 213
HaeIII	GGCC	1 cut(s)	20
HgaI	GACGC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	3 cut(s)	25, 169, 284
HphI	GGTGA	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	3 cut(s)	127, 254, 317
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 182, 185
HpyF3I	CTNAG	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	25, 169, 284
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	3 cut(s)	20, 191, 199
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	2 cut(s)	78, 336
MnlI	CCTC	2 cut(s)	209, 321
MseI	TTAA	2 cut(s)	240, 335
MslI	CAYNNNNRTG	1 cut(s)	285
MspCI	CTTAAG	1 cut(s)	239
MwoI	GCNNNNNNNGC	5 cut(s)	14, 17, 23, 182, 185
NcoI	CCATGG	1 cut(s)	21
NlaIII	CATG	3 cut(s)	25, 169, 284
NmuCI	GTSAC	1 cut(s)	268
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PkrI	GCNGC	7 cut(s)	10, 19, 178, 181, 184, 187, 214
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	240, 335
SatI	GCNGC	7 cut(s)	9, 18, 177, 180, 183, 186, 213
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	4 cut(s)	119, 141, 265, 275
SfaNI	GCATC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	134, 239
SmoI	CTYRAG	2 cut(s)	134, 239
Sse9I	AATT	2 cut(s)	78, 336
SsiI	CCGC	5 cut(s)	17, 97, 177, 183, 186
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	258
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	2 cut(s)	78, 336
TauI	GCSGC	4 cut(s)	20, 179, 185, 188
Tru1I	TTAA	2 cut(s)	240, 335
Tru9I	TTAA	2 cut(s)	240, 335
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	8, 179, 212
Tsp45I	GTSAC	1 cut(s)	268
TspRI	CASTG	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.