Rmu_ssc0000361.1_g000015

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000361.1
OG0012674
Physical Location & Seq
Reverse (-)
99250 .. 99594
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000361.1_g000015.1.cds

Sequence Viewer

Length: 345 bp
atgcaagcagcactggcggccatggcagtccactctgtgatgctctcaacttactcatcccccactctcttcgcccaaattcaaacccctaacccccgcccaactctccactccgccttcgacgacgtctctctcaaggtccccatcaaatctcaatcccaatccatgtctctcgccgccgccgcctcccccaagcccctcaccgtcgtcgctgccaccaagaaggtcgttgccgtccttaagggcacttcaaccgtcgaaggtgtcatcaccttgactcaagacgatggcggcacttcgtcttgccttcctcatcagttgcttcttgaatgtttaattgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

114

Amino Acids

11.8

Weight (kDa)

7.83

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AciI CCGC 7 cut(s) 17, 97, 114, 177, 180, 183, 291
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 37
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 3 cut(s) 83, 252, 329
Alw26I GTCTC 2 cut(s) 133, 174
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 2 cut(s) 8, 212
ApoI RAATTY 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 193, 262
AvaII GGWCC 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 20, 199
BccI CCATC 2 cut(s) 152, 281
BceAI ACGGC 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 133, 174
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 292
BlsI GCNGC 7 cut(s) 10, 19, 178, 181, 184, 214, 293
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 119, 264
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 248
BseXI GCAGC 2 cut(s) 20, 199
BshFI GGCC 1 cut(s) 20
BslFI GGGAC 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 133, 174
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 248
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 7 cut(s) 17, 97, 114, 177, 180, 183, 291
BspANI GGCC 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 141
BspTI CTTAAG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 205, 256
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 56
BstMAI GTCTC 2 cut(s) 133, 174
BstMWI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 182
BstSLI GKGCMC 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 20, 199
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 139
CviAII CATG 2 cut(s) 22, 166
CviJI RGCY 2 cut(s) 20, 196
CviKI_1 RGCY 2 cut(s) 20, 196
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 2 cut(s) 25, 169
FaiI YATR 2 cut(s) 23, 167
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 21, 165
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 292
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 292
GluI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 292
HaeIII GGCC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 25, 169
HinfI GANTC 1 cut(s) 277
HphI GGTGA 2 cut(s) 193, 262
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 281, 326
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 5 cut(s) 125, 128, 209, 212, 260
HpyAV CCTTC 4 cut(s) 127, 217, 254, 317
HpyCH4III ACNGT 2 cut(s) 205, 256
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 182
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 25, 169
Lsp1109I GCAGC 2 cut(s) 20, 199
LweI GCATC 1 cut(s) 30
MaeII ACGT 1 cut(s) 126
MboII GAAGA 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 2 cut(s) 78, 336
MlyI GAGTC 1 cut(s) 271
MnlI CCTC 3 cut(s) 196, 209, 321
MseI TTAA 2 cut(s) 240, 335
MspCI CTTAAG 1 cut(s) 239
MwoI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 182
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 2 cut(s) 25, 169
NlaIV GGNNCC 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 7 cut(s) 10, 19, 178, 181, 184, 214, 293
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 240, 335
SatI GCNGC 7 cut(s) 9, 18, 177, 180, 183, 213, 292
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 271
SduI GDGCHC 1 cut(s) 248
SetI ASST 5 cut(s) 129, 141, 228, 265, 275
SfaNI GCATC 1 cut(s) 30
SinI GGWCC 1 cut(s) 139
SmlI CTYRAG 3 cut(s) 134, 239, 279
SmoI CTYRAG 3 cut(s) 134, 239, 279
Sse9I AATT 2 cut(s) 78, 336
SsiI CCGC 7 cut(s) 17, 97, 114, 177, 180, 183, 291
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 205, 256
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 120, 258
TasI AATT 2 cut(s) 78, 336
TauI GCSGC 5 cut(s) 20, 179, 182, 185, 294
Tru1I TTAA 2 cut(s) 240, 335
Tru9I TTAA 2 cut(s) 240, 335
TscAI CASTG 1 cut(s) 18
TseI GCWGC 2 cut(s) 8, 212
TspRI CASTG 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 125
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 139
XapI RAATTY 1 cut(s) 78
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.