Rh4DG383900

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012674
Physical Location & Seq
Reverse (-)
60091559 .. 60092034
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG383900.1

Sequence Viewer

Length: 318 bp
ATGCAAGCAGCACTGGCGGCCATGGCAGCCCACTCTGTGATGCTCTCAGCTTACTCATCCCCCACTCTCTTCGCCCAAATTCAAACCCCTAACCCCCGCCCAACTCTCCACTCCGCCTTCCACGGCGTCTCTCTCAAGCTCCCCATCAAATCCCAATCCCAATCCATGTCTCTTGCTGCCGCCGCCTCCCCCAAGCCCCTCACGGTCGTCGCTGCCACCAAGAAGGTCGTTGCCGTCCTTAAGGGCACTTCAACCGTCGAAGGTGTCGTCACCTTGACCCAAGACGATGACGGCACTTCGTCTTGCCTTCCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

105

Amino Acids

10.77

Weight (kDa)

9.36

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 17, 97, 114, 180, 183
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 37
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 2 cut(s) 83, 252
AluBI AGCT 2 cut(s) 50, 139
AluI AGCT 2 cut(s) 50, 139
Alw26I GTCTC 2 cut(s) 133, 174
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 8, 26, 176, 212
ApoI RAATTY 1 cut(s) 78
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
AsuHPI GGTGA 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 248
BbvI GCAGC 4 cut(s) 20, 38, 163, 199
BccI CCATC 1 cut(s) 152
BceAI ACGGC 3 cut(s) 139, 218, 307
BcoDI GTCTC 2 cut(s) 133, 174
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 213
BlsI GCNGC 7 cut(s) 10, 19, 28, 178, 181, 184, 214
BmsI GCATC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 21, 121
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 21, 121
BseGI GGATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 248
BseXI GCAGC 4 cut(s) 20, 38, 163, 199
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 207
BsmAI GTCTC 2 cut(s) 133, 174
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 248
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 5 cut(s) 17, 97, 114, 180, 183
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 21, 121
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 21
Bst4CI ACNGT 2 cut(s) 205, 256
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 2 cut(s) 21, 121
BstF5I GGATG 1 cut(s) 56
BstMAI GTCTC 2 cut(s) 133, 174
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 5 cut(s) 14, 17, 23, 26, 182
BstSLI GKGCMC 1 cut(s) 248
BstV1I GCAGC 4 cut(s) 20, 38, 163, 199
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 2 cut(s) 21, 121
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 6
CseI GACGC 1 cut(s) 115
CviAII CATG 2 cut(s) 22, 166
CviJI RGCY 5 cut(s) 20, 29, 50, 139, 196
CviKI_1 RGCY 5 cut(s) 20, 29, 50, 139, 196
DdeI CTNAG 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 2 cut(s) 25, 169
FaiI YATR 2 cut(s) 23, 167
FatI CATG 2 cut(s) 21, 165
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 213
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 213
GluI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 213
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 25, 169
HphI GGTGA 1 cut(s) 262
Hpy99I CGWCG 2 cut(s) 212, 260
HpyAV CCTTC 4 cut(s) 127, 217, 254, 317
HpyCH4III ACNGT 2 cut(s) 205, 256
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 17, 23, 26, 182
HpyF3I CTNAG 1 cut(s) 46
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 25, 169
LmnI GCTCC 1 cut(s) 144
Lsp1109I GCAGC 4 cut(s) 20, 38, 163, 199
LweI GCATC 1 cut(s) 30
MaeIII GTNAC 1 cut(s) 268
MboII GAAGA 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 1 cut(s) 78
MnlI CCTC 2 cut(s) 196, 209
MseI TTAA 1 cut(s) 240
MspCI CTTAAG 1 cut(s) 239
MwoI GCNNNNNNNGC 5 cut(s) 14, 17, 23, 26, 182
NcoI CCATGG 1 cut(s) 21
NlaIII CATG 2 cut(s) 25, 169
NmuCI GTSAC 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PkrI GCNGC 7 cut(s) 10, 19, 28, 178, 181, 184, 214
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 213
SduI GDGCHC 1 cut(s) 248
SetI ASST 5 cut(s) 52, 141, 228, 265, 275
SfaNI GCATC 1 cut(s) 30
SmlI CTYRAG 2 cut(s) 134, 239
SmoI CTYRAG 2 cut(s) 134, 239
Sse9I AATT 1 cut(s) 78
SsiI CCGC 5 cut(s) 17, 97, 114, 180, 183
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 205, 256
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 78
TauI GCSGC 3 cut(s) 20, 182, 185
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 4 cut(s) 8, 26, 176, 212
Tsp45I GTSAC 1 cut(s) 268
TspRI CASTG 1 cut(s) 18
Vha464I CTTAAG 1 cut(s) 239
XapI RAATTY 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.