Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019424.1

Orthogroup ID

OG0012674

Physical Location & Seq

Genomic Coordinates Reverse (-)

324 .. 1503

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019424.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atcttcattttcctcctcctccttgcagattggggtaagttcccatttatacccagtcttgagtcgattgaaatttacacagaatggggtggattatcgtcatcatcatcttcatttccccttctgcaccatccaacgcaagctgcactggcggccatggcagcccactttgtgatgctctcagctcactcatcccccactctcttcgcccaaattcaaacccctaacccccgcccaactctccacttcgccttccccggcatctctctcaagctccccatcaaatcccaatcccaatccatatctctagccgccgccgccgcctcccccaagcccctcacggtcgtcgctgccaccaagaaggtcgttaccgtccttaagggcacttcaaccgtcgaaggtgtcgtcaccttgacccaagacgatgacggcacttcatcttgccttcctcatcagatgcttcttgaatgtttaattgcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

160

Amino Acids

16.98

Weight (kDa)

6.63

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012674)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333961
rosa_laevigata	RLG00000014578 RLG00000032726
rosa_multiflora	Rmu_sc0001485.1_g000001 Rmu_sc0002561.1_g000001 Rmu_sc0003629.1_g000068 Rmu_sc0006452.1_g000011 Rmu_sc0010342.1_g000010 Rmu_sc0019424.1_g000001 Rmu_ssc0000361.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046480
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh2AG347500 Rh4BG367500 Rh4DG383900 Rh5CG263600 Rh5DG139100 Rh6AG196400 Rh6CG201600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	152, 232, 312, 315, 318, 321
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	72, 213
AdeI	CACNNNGTG	1 cut(s)	172
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	71, 218, 390, 467
AluBI	AGCT	3 cut(s)	143, 185, 274
AluI	AGCT	3 cut(s)	143, 185, 274
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	3 cut(s)	143, 161, 350
ApoI	RAATTY	2 cut(s)	72, 213
ArsI	GACNNNNNNTTYG	2 cut(s)	390, 422
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	400
BaeGI	GKGCMC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	130, 173, 337
BccI	CCATC	2 cut(s)	138, 287
BceAI	ACGGC	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	308
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	8 cut(s)	144, 153, 162, 312, 315, 318, 321, 351
BlsI	GCNGC	8 cut(s)	145, 154, 163, 313, 316, 319, 322, 352
Bme1390I	CCNGG	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	3 cut(s)	165, 270, 447
BmuI	ACTGGG	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	80, 254
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	156, 256
Bse1I	ACTGG	2 cut(s)	54, 153
BseDI	CCNNGG	2 cut(s)	156, 256
BseGI	GGATG	2 cut(s)	130, 191
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	54, 153
BseRI	GAGGAG	2 cut(s)	5, 8
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	130, 173, 337
BsgI	GTGCAG	2 cut(s)	110, 129
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	258
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	6 cut(s)	152, 232, 312, 315, 318, 321
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	194
BspTI	CTTAAG	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	54, 153
BssECI	CCNNGG	2 cut(s)	156, 256
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	343, 373, 394
Bst6I	CTCTTC	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	181
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	130, 191
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 152, 158, 161, 317, 320
BstSCI	CCNGG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	386
BstV1I	GCAGC	3 cut(s)	130, 173, 337
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	130, 191
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	141
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	7 cut(s)	143, 155, 164, 185, 274, 311, 334
CviKI_1	RGCY	7 cut(s)	143, 155, 164, 185, 274, 311, 334
DdeI	CTNAG	1 cut(s)	181
DraIII	CACNNNGTG	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	50, 158, 302
FatI	CATG	1 cut(s)	156
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	8 cut(s)	144, 153, 162, 312, 315, 318, 321, 351
FokI	GGATG	2 cut(s)	117, 178
Fsp4HI	GCNGC	8 cut(s)	144, 153, 162, 312, 315, 318, 321, 351
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	8 cut(s)	144, 153, 162, 312, 315, 318, 321, 351
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	2 cut(s)	59, 464
Hpy99I	CGWCG	2 cut(s)	350, 398
HpyAV	CCTTC	5 cut(s)	131, 262, 355, 392, 455
HpyCH4III	ACNGT	3 cut(s)	343, 373, 394
HpyCH4V	TGCA	3 cut(s)	26, 127, 146
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 152, 158, 161, 317, 320
HpyF3I	CTNAG	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	3 cut(s)	67, 134, 271
Lsp1109I	GCAGC	3 cut(s)	130, 173, 337
LweI	GCATC	3 cut(s)	165, 270, 447
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	367, 406
MboII	GAAGA	2 cut(s)	102, 196
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	3 cut(s)	72, 213, 474
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	23, 26, 29, 334, 347, 459
MseI	TTAA	2 cut(s)	378, 473
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	6 cut(s)	149, 152, 158, 161, 317, 320
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	156
NlaIII	CATG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PkrI	GCNGC	8 cut(s)	145, 154, 163, 313, 316, 319, 322, 352
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	378, 473
SatI	GCNGC	8 cut(s)	144, 153, 162, 312, 315, 318, 321, 351
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	6 cut(s)	145, 187, 276, 366, 403, 413
SfaNI	GCATC	3 cut(s)	165, 270, 447
SmlI	CTYRAG	3 cut(s)	59, 269, 377
SmoI	CTYRAG	3 cut(s)	59, 269, 377
Sse9I	AATT	3 cut(s)	72, 213, 474
SsiI	CCGC	6 cut(s)	152, 232, 312, 315, 318, 321
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	343, 373, 394
TaqI	TCGA	2 cut(s)	65, 396
TasI	AATT	3 cut(s)	72, 213, 474
TauI	GCSGC	5 cut(s)	155, 314, 317, 320, 323
Tru1I	TTAA	2 cut(s)	378, 473
Tru9I	TTAA	2 cut(s)	378, 473
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	143, 161, 350
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	102, 426
TspRI	CASTG	1 cut(s)	153
Vha464I	CTTAAG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	72, 213
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.