Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006452.1

Orthogroup ID

OG0012674

Physical Location & Seq

Genomic Coordinates Reverse (-)

51528 .. 52948

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006452.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgagaatcgagctgagccactacacggaaacccttgctggaaaagagggcaacaaaacccaagtagttttgagctccgccgtggctggagagaagggagaaccaagcaggaggctgagacttgtgagtttgggttggtatcactgccagaggatgccgaaaaatgaagaaatcgccgggttgagtcggacaatatctggccgggtcaggatcttcattttcctccgcctccctgcagattggggtgagttcccatttttacccagtcttgagtcgattgaaatttacacagaatggggtggattatcatcatcatcatcatcttcatttccccttctgtaccaaccaatgcaagcagcactggcggccatggcagcccactctgtgatgctctcagcttactcatcccccactctcttcgcccaaattcaaacccctaacccccgctcaactctccactccgccttccatgacgtctttctcaagctccccatcaaatcccaatcccaatccttgtctctcgccgccgcccccaagcccctcacggtcgttgctgccaccaagaaggtcgtcgccgtccttaagggcacttcaaccatcgaaggtgtcgtcaccttgacccaagatgatgacggcacttcgtcttgccttcctcatcaattgctccctgaatgtttaattgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

228

Amino Acids

24.73

Weight (kDa)

8.44

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012674)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333961
rosa_laevigata	RLG00000014578 RLG00000032726
rosa_multiflora	Rmu_sc0001485.1_g000001 Rmu_sc0002561.1_g000001 Rmu_sc0003629.1_g000068 Rmu_sc0006452.1_g000011 Rmu_sc0010342.1_g000010 Rmu_sc0019424.1_g000001 Rmu_ssc0000361.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046480
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh2AG347500 Rh4BG367500 Rh4DG383900 Rh5CG263600 Rh5DG139100 Rh6AG196400 Rh6CG201600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	477
AccBSI	CCGCTC	1 cut(s)	447
AciI	CCGC	7 cut(s)	78, 226, 365, 445, 462, 525, 528
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	2 cut(s)	199, 366
AcsI	RAATTY	2 cut(s)	282, 426
AcyI	GRCGYC	1 cut(s)	474
AdeI	CACNNNGTG	1 cut(s)	385
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	25
AflII	CTTAAG	1 cut(s)	581
AgsI	TTSAA	3 cut(s)	281, 431, 594
AluBI	AGCT	4 cut(s)	13, 75, 398, 487
AluI	AGCT	4 cut(s)	13, 75, 398, 487
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	112, 522
AlwI	GGATC	1 cut(s)	218
AoxI	GGCC	2 cut(s)	199, 366
ApeKI	GCWGC	3 cut(s)	356, 374, 554
ApoI	RAATTY	2 cut(s)	282, 426
ArsI	GACNNNNNNTTYG	2 cut(s)	594, 626
AsuC2I	CCSGG	2 cut(s)	178, 203
AsuHPI	GGTGA	2 cut(s)	257, 604
BaeGI	GKGCMC	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	368, 386, 541
BccI	CCATC	2 cut(s)	500, 605
BceAI	ACGGC	3 cut(s)	65, 560, 649
BcnI	CCSGG	2 cut(s)	178, 203
BcoDI	GTCTC	2 cut(s)	112, 522
BfmI	CTRYAG	1 cut(s)	234
BfrI	CTTAAG	1 cut(s)	581
BisI	GCNGC	6 cut(s)	357, 366, 375, 525, 528, 555
BlpI	GCTNAGC	1 cut(s)	14
BlsI	GCNGC	6 cut(s)	358, 367, 376, 526, 529, 556
Bme1390I	CCNGG	2 cut(s)	178, 203
BmrFI	CCNGG	2 cut(s)	178, 203
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	144, 378
BmuI	ACTGGG	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	290, 467
BpuMI	CCSGG	2 cut(s)	178, 203
BsaBI	GATNNNNATC	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	81, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	264, 366
Bse8I	GATNNNNATC	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	81, 369
BseGI	GGATG	2 cut(s)	159, 404
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	3 cut(s)	5, 107, 408
BseNI	ACTGG	2 cut(s)	264, 366
BseSI	GKGCMC	1 cut(s)	590
BseXI	GCAGC	3 cut(s)	368, 386, 541
Bsh1285I	CGRYCG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	201, 368
BsiEI	CGRYCG	1 cut(s)	549
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	177, 202
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	2 cut(s)	112, 522
BsnI	GGCC	2 cut(s)	201, 368
Bsp1286I	GDGCHC	2 cut(s)	77, 590
Bsp143I	GATC	1 cut(s)	210
Bsp1720I	GCTNAGC	1 cut(s)	14
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	7 cut(s)	78, 226, 365, 445, 462, 525, 528
BspANI	GGCC	2 cut(s)	201, 368
BspCNI	CTCAG	3 cut(s)	6, 108, 407
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	218
BspTI	CTTAAG	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	264, 366
BssECI	CCNNGG	2 cut(s)	81, 369
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	1 cut(s)	422
BstACI	GRCGYC	1 cut(s)	474
BstAFI	CTTAAG	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	14, 116, 394
BstDSI	CCRYGG	2 cut(s)	81, 369
BstF5I	GGATG	2 cut(s)	159, 404
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	2 cut(s)	112, 522
BstMBI	GATC	1 cut(s)	210
BstMCI	CGRYCG	1 cut(s)	549
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 365, 371, 374
BstSCI	CCNGG	2 cut(s)	176, 201
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	590
BstV1I	GCAGC	3 cut(s)	368, 386, 541
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	201, 368
BtgI	CCRYGG	2 cut(s)	81, 369
BtsCI	GGATG	2 cut(s)	159, 404
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	142, 359
Cac8I	GCNNGC	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	2 cut(s)	370, 470
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	3 cut(s)	14, 116, 394
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
DraIII	CACNNNGTG	1 cut(s)	385
EaeI	YGGCCR	2 cut(s)	199, 366
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EciI	GGCGGA	3 cut(s)	67, 215, 451
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	369
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	2 cut(s)	373, 473
FaiI	YATR	3 cut(s)	371, 471, 685
FatI	CATG	2 cut(s)	369, 469
FauI	CCCGC	1 cut(s)	452
Fnu4HI	GCNGC	6 cut(s)	357, 366, 375, 525, 528, 555
FokI	GGATG	2 cut(s)	166, 391
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	6 cut(s)	357, 366, 375, 525, 528, 555
GluI	GCNGC	6 cut(s)	357, 366, 375, 525, 528, 555
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	201, 368
HapII	CCGG	2 cut(s)	177, 202
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	373, 473
HinfI	GANTC	3 cut(s)	6, 184, 272
HpaII	CCGG	2 cut(s)	177, 202
HphI	GGTGA	2 cut(s)	257, 604
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	208, 269
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	6 cut(s)	88, 344, 475, 559, 596, 659
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	3 cut(s)	236, 352, 683
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 365, 371, 374
HpyF3I	CTNAG	3 cut(s)	14, 116, 394
HpySE526I	ACGT	1 cut(s)	474
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	2 cut(s)	373, 473
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	3 cut(s)	80, 492, 669
Lsp1109I	GCAGC	3 cut(s)	368, 386, 541
LweI	GCATC	2 cut(s)	144, 378
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	1 cut(s)	212
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	1 cut(s)	210
MboII	GAAGA	4 cut(s)	179, 205, 315, 409
MfeI	CAATTG	1 cut(s)	659
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	77, 590
MluCI	AATT	4 cut(s)	282, 426, 659, 678
MlyI	GAGTC	2 cut(s)	193, 281
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	7 cut(s)	40, 105, 144, 233, 239, 551, 663
MseI	TTAA	2 cut(s)	582, 677
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	2 cut(s)	177, 202
MspR9I	CCNGG	2 cut(s)	178, 203
MunI	CAATTG	1 cut(s)	659
MwoI	GCNNNNNNNGC	4 cut(s)	362, 365, 371, 374
NciI	CCSGG	2 cut(s)	178, 203
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	2 cut(s)	373, 473
NmuCI	GTSAC	1 cut(s)	610
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	6 cut(s)	358, 367, 376, 526, 529, 556
PleI	GAGTC	2 cut(s)	192, 280
PpsI	GAGTC	2 cut(s)	192, 280
Psp124BI	GAGCTC	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	582, 677
SatI	GCNGC	6 cut(s)	357, 366, 375, 525, 528, 555
Sau3AI	GATC	1 cut(s)	210
SchI	GAGTC	2 cut(s)	193, 281
ScrFI	CCNGG	2 cut(s)	178, 203
SduI	GDGCHC	2 cut(s)	77, 590
SetI	ASST	8 cut(s)	15, 77, 400, 477, 489, 570, 607, 617
SfaNI	GCATC	2 cut(s)	144, 378
SfcI	CTRYAG	1 cut(s)	234
SmlI	CTYRAG	3 cut(s)	269, 482, 581
SmoI	CTYRAG	3 cut(s)	269, 482, 581
Sse9I	AATT	4 cut(s)	282, 426, 659, 678
SsiI	CCGC	7 cut(s)	78, 226, 365, 445, 462, 525, 528
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	176, 201
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	3 cut(s)	9, 275, 600
TasI	AATT	4 cut(s)	282, 426, 659, 678
TauI	GCSGC	3 cut(s)	368, 527, 530
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	2 cut(s)	582, 677
Tru9I	TTAA	2 cut(s)	582, 677
TscAI	CASTG	2 cut(s)	149, 366
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	3 cut(s)	356, 374, 554
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	3 cut(s)	180, 205, 315
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	149, 366
Vha464I	CTTAAG	1 cut(s)	581
XapI	RAATTY	2 cut(s)	282, 426
ZraI	GACGTC	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.