Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003629.1

Orthogroup ID

OG0012674

Physical Location & Seq

Genomic Coordinates Forward (+)

292104 .. 292568

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003629.1_g000068.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgttcctcctcctccctgcagattggggtaagttcccatttttaccccgtcttgagtcgattgaaatttacatagaatggggtggattatcatcatcatcattttcatttccccttctgcaccaaccaatgcaagcaacattggcggccatggcagcccactctgtgatgctctcagcttactcatcccccactttcttcgcccaaattcaaacccctaacccccggccaactctccactccgccttccacggcgtctctctcaagctccccatgaaatcccaatcccaatccatgtctctcaccgccgccgccgcagcccccaagccccttacagttgtcactgccaccaagaaggttgttgccgtccttaagggcacttcaactatcgaaggtgtcgtcaccttgacccaagacgatgacggcactagcttcgtcttgccttcctcatcagttgcttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020

Pfam Domains

Protein Families

Sod_Cu

Protein Analysis

154

Amino Acids

16.37

Weight (kDa)

8.09

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012674)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0333961
rosa_laevigata	RLG00000014578 RLG00000032726
rosa_multiflora	Rmu_sc0001485.1_g000001 Rmu_sc0002561.1_g000001 Rmu_sc0003629.1_g000068 Rmu_sc0006452.1_g000011 Rmu_sc0010342.1_g000010 Rmu_sc0019424.1_g000001 Rmu_ssc0000361.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046480
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh2AG347500 Rh4BG367500 Rh4DG383900 Rh5CG263600 Rh5DG139100 Rh6AG196400 Rh6CG201600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	146, 243, 306, 309, 312, 315
AcoI	YGGCCR	2 cut(s)	147, 227
AcsI	RAATTY	2 cut(s)	66, 207
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	65, 212, 384
AluBI	AGCT	3 cut(s)	179, 268, 432
AluI	AGCT	3 cut(s)	179, 268, 432
Alw26I	GTCTC	2 cut(s)	262, 303
AoxI	GGCC	2 cut(s)	147, 227
ApeKI	GCWGC	2 cut(s)	155, 317
ApoI	RAATTY	2 cut(s)	66, 207
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	295, 394
BaeGI	GKGCMC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	167, 329
BceAI	ACGGC	3 cut(s)	268, 350, 439
BcgI	CGANNNNNNTGC	2 cut(s)	415, 449
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	262, 303
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	6 cut(s)	147, 156, 309, 312, 315, 318
BlsI	GCNGC	6 cut(s)	148, 157, 310, 313, 316, 319
Bme1390I	CCNGG	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	74, 248
BpuMI	CCSGG	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	150, 224, 250
Bse8I	GATNNNNATC	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	150, 224, 250
BseGI	GGATG	1 cut(s)	185
BseJI	GATNNNNATC	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	167, 329
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	149, 229
BsiSI	CCGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	262, 303
BsmBI	CGTCTC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	149, 229
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	6 cut(s)	146, 243, 306, 309, 312, 315
BspANI	GGCC	2 cut(s)	149, 229
BspCNI	CTCAG	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	22
BspTI	CTTAAG	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	150, 224, 250
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	337
BstACI	GRCGYC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	175
BstDSI	CCRYGG	2 cut(s)	150, 250
BstF5I	GGATG	1 cut(s)	185
BstMAI	GTCTC	2 cut(s)	262, 303
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 152, 155, 314, 317
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	167, 329
BsuRI	GGCC	2 cut(s)	149, 229
BtgI	CCRYGG	2 cut(s)	150, 250
BtsCI	GGATG	1 cut(s)	185
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	135
CseI	GACGC	1 cut(s)	244
CviAII	CATG	3 cut(s)	151, 274, 295
CviJI	RGCY	8 cut(s)	149, 158, 179, 229, 268, 320, 328, 432
CviKI_1	RGCY	8 cut(s)	149, 158, 179, 229, 268, 320, 328, 432
DdeI	CTNAG	1 cut(s)	175
DraIII	CACNNNGTG	1 cut(s)	166
EaeI	YGGCCR	2 cut(s)	147, 227
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	3 cut(s)	154, 277, 298
FaiI	YATR	4 cut(s)	74, 152, 275, 296
FatI	CATG	3 cut(s)	150, 273, 294
Fnu4HI	GCNGC	6 cut(s)	147, 156, 309, 312, 315, 318
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	6 cut(s)	147, 156, 309, 312, 315, 318
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	6 cut(s)	147, 156, 309, 312, 315, 318
HaeIII	GGCC	2 cut(s)	149, 229
HapII	CCGG	1 cut(s)	226
HgaI	GACGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	154, 277, 298
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	2 cut(s)	295, 394
Hpy188III	TCNNGA	1 cut(s)	53
HpyAV	CCTTC	5 cut(s)	125, 256, 349, 386, 453
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	3 cut(s)	20, 121, 133
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 152, 155, 314, 317
HpyF3I	CTNAG	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	154, 277, 298
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	2 cut(s)	30, 239
Lsp1109I	GCAGC	2 cut(s)	167, 329
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	2 cut(s)	340, 400
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	2 cut(s)	66, 207
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	4 cut(s)	17, 20, 23, 457
MseI	TTAA	1 cut(s)	372
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	5 cut(s)	143, 152, 155, 314, 317
NciI	CCSGG	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	150
NlaIII	CATG	3 cut(s)	154, 277, 298
NmuCI	GTSAC	2 cut(s)	340, 400
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PkrI	GCNGC	6 cut(s)	148, 157, 310, 313, 316, 319
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	6 cut(s)	147, 156, 309, 312, 315, 318
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	6 cut(s)	181, 270, 360, 397, 407, 434
SfaNI	GCATC	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	18
SmlI	CTYRAG	3 cut(s)	53, 263, 371
SmoI	CTYRAG	3 cut(s)	53, 263, 371
Sse9I	AATT	2 cut(s)	66, 207
SsiI	CCGC	6 cut(s)	146, 243, 306, 309, 312, 315
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	2 cut(s)	59, 390
TasI	AATT	2 cut(s)	66, 207
TauI	GCSGC	4 cut(s)	149, 311, 314, 317
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	340, 400
TseI	GCWGC	2 cut(s)	155, 317
Tsp45I	GTSAC	2 cut(s)	340, 400
TspDTI	ATGAA	2 cut(s)	96, 290
TspRI	CASTG	1 cut(s)	349
Vha464I	CTTAAG	1 cut(s)	371
XapI	RAATTY	2 cut(s)	66, 207
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.