RchiOBHm_Chr1g0336161
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014841
Physical Location & Seq
Reverse (-)
27839992 .. 27841023
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGGGATATTTAGACCCTGAATATCTTCAATCAAACACACTCACAGAAAAGAGTGACGTCTATAGTTTTGGTTTTGTACTTGTGGAGCTACTAACAAGCAGAATGGCACTTTCTTTAGACAGGCCAGAAGCGGAGCGGAGCCTAGCAAACGTCTTTGTTTGTGCAGTGGACAATACTTCGCTGCCCAACCATGGGCAGCACTTCCTAACCAACACTTGTGTGTCTCACTCAAGGTCCAACACGTGTGGAAGATGGTCTATTGATGAAGAAGTAGTTAACGACGGAAATTTTGAGACAGTTGAAAAAGTTGCCGATCTGGCCAAAAGATGTATAAGCATGAAAGGGAGAGAAAGGCCAACTATGAGGGAAGTAACAAGGGAGCTAGAAAGACTGCAAATATTGCCAAAGCATTCAGGGGGTGAAAAGCCTGATTCTTCTCCTAAAGAGACTGACTACTTGCTTGCATCACCTTCAAACGCTTACGTTGTCGATGTTAAGGGTGAAGGCGATGTGGTTCCATTACTACCAGTATTGAGTATGACCAGAGCAAGCAAAATCAAGCCCAAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

190

Amino Acids

21.15

Weight (kDa)

5.63

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 125 1.5e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 136
AciI CCGC 2 cut(s) 131, 136
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 286
AcvI CACGTG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 191, 192
AflIII ACRYGT 2 cut(s) 240, 242
AgsI TTSAA 3 cut(s) 29, 302, 474
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 2 cut(s) 88, 382
AluI AGCT 2 cut(s) 88, 382
Alw26I GTCTC 3 cut(s) 228, 287, 440
AoxI GGCC 3 cut(s) 122, 318, 353
ApeKI GCWGC 2 cut(s) 181, 196
ApoI RAATTY 1 cut(s) 286
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 431, 459, 512
AvaII GGWCC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 320
BbrPI CACGTG 1 cut(s) 243
BbvI GCAGC 2 cut(s) 168, 208
BccI CCATC 1 cut(s) 246
BcoDI GTCTC 3 cut(s) 228, 287, 440
BfaI CTAG 2 cut(s) 143, 383
BfmI CTRYAG 1 cut(s) 61
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 2 cut(s) 182, 197
BlsI GCNGC 2 cut(s) 183, 198
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 140, 516
BmsI GCATC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 214
BsaAI YACGTR 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 192
Bse1I ACTGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 191, 192
BseNI ACTGG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 168, 208
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 3 cut(s) 124, 320, 355
BslI CCNNNNNNNGG 2 cut(s) 191, 192
BsmAI GTCTC 3 cut(s) 228, 287, 440
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 3 cut(s) 124, 320, 355
Bsp143I GATC 1 cut(s) 313
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 2 cut(s) 131, 136
BspANI GGCC 3 cut(s) 124, 320, 355
BspLI GGNNCC 2 cut(s) 140, 516
BsrBI CCGCTC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 527
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 400
BstBAI YACGTR 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 462, 550
BstDSI CCRYGG 1 cut(s) 190
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 3 cut(s) 228, 287, 440
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 317, 400
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 168, 208
BsuRI GGCC 3 cut(s) 124, 320, 355
BtgI CCRYGG 1 cut(s) 190
BtgZI GCGATG 1 cut(s) 522
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 462, 550
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 77
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 2 cut(s) 191, 337
CviJI RGCY 8 cut(s) 88, 124, 141, 320, 355, 382, 427, 562
CviKI_1 RGCY 8 cut(s) 88, 124, 141, 320, 355, 382, 427, 562
CviQI GTAC 1 cut(s) 77
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 234
Eco72I CACGTG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 2 cut(s) 194, 340
FaiI YATR 6 cut(s) 63, 192, 332, 338, 362, 539
FatI CATG 2 cut(s) 190, 336
Fnu4HI GCNGC 2 cut(s) 182, 197
Fsp4HI GCNGC 2 cut(s) 182, 197
FspBI CTAG 2 cut(s) 143, 383
GluI GCNGC 2 cut(s) 182, 197
HaeIII GGCC 3 cut(s) 124, 320, 355
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 194, 340
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 1 cut(s) 431
HpaI GTTAAC 1 cut(s) 277
HphI GGTGA 3 cut(s) 431, 459, 512
Hpy166II GTNNAC 2 cut(s) 169, 277
Hpy8I GTNNAC 2 cut(s) 169, 277
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 480, 497
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 4 cut(s) 57, 150, 242, 483
HpyCH4V TGCA 3 cut(s) 164, 394, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 400
HpySE526I ACGT 4 cut(s) 57, 150, 242, 483
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 194, 340
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 4 cut(s) 85, 133, 138, 379
LpnPI CCDG 8 cut(s) 30, 106, 138, 302, 399, 441, 540, 556
Lsp1109I GCAGC 2 cut(s) 168, 208
LweI GCATC 1 cut(s) 473
MaeI CTAG 2 cut(s) 143, 383
MaeII ACGT 4 cut(s) 57, 150, 242, 483
MaeIII GTNAC 2 cut(s) 53, 370
MalI GATC 1 cut(s) 315
MbiI CCGCTC 1 cut(s) 136
MboI GATC 1 cut(s) 313
MboII GAAGA 4 cut(s) 17, 261, 278, 426
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 1 cut(s) 286
MluNI TGGCCA 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 320
MseI TTAA 3 cut(s) 276, 495, 571
MslI CAYNNNNRTG 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 317, 400
NcoI CCATGG 1 cut(s) 190
NdeII GATC 1 cut(s) 313
NlaIII CATG 2 cut(s) 194, 340
NlaIV GGNNCC 2 cut(s) 140, 516
NmuCI GTSAC 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 218
PctI GAATGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 2 cut(s) 183, 198
PmaCI CACGTG 1 cut(s) 243
PmlI CACGTG 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 243
PspCI CACGTG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 140, 516
PspPI GGNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 276, 495, 571
SatI GCNGC 2 cut(s) 182, 197
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 234
SetI ASST 8 cut(s) 60, 90, 153, 236, 245, 384, 472, 486
SfaNI GCATC 1 cut(s) 473
SfcI CTRYAG 1 cut(s) 61
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 1 cut(s) 286
SsiI CCGC 2 cut(s) 131, 136
SspI AATATT 1 cut(s) 399
SspMI CTAG 2 cut(s) 143, 383
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 4 cut(s) 60, 153, 245, 486
TaqI TCGA 1 cut(s) 489
TasI AATT 1 cut(s) 286
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 276, 495, 571
Tru9I TTAA 3 cut(s) 276, 495, 571
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 181, 196
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 279, 353
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 2 cut(s) 143, 383
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.