Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003630.1

Orthogroup ID

OG0014841

Physical Location & Seq

Genomic Coordinates Forward (+)

19787 .. 20968

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003630.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgggcgtattaccagctgggaggttgcaaatcatgcatctctcttatgtggttgttctattagtagcaaaagctcaagccccaccgcctcaagccaagccgaattgcccagagcgctgcgtggaagatggtctattgaagcacattcttgatgaggaagtagttaaggatggacattttgagactgttgaaaaagttgccgatctggccaaaagatgtctaagcatgaaagggagagaaaggccaactatgagagaagtagcaagggagctagaaggattgcaaagtttgccaatgcattcaaggggtggaaagcctgattcttctcctaaagagactgactacttgcttgcgtcaccttcaagtgcttacgttgtcgatgttaagggtgaaggcgagagtgaaggcgatggtggttccattacaaccagtattgagtacgaccagagcatgcaaaatcaagcccaagtgttgaggccttatgatgctggacgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

165

Amino Acids

18.02

Weight (kDa)

5.42

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014841)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324591 RchiOBHm_Chr1g0336161 RchiOBHm_Chr3g0476711 RchiOBHm_Chr3g0476731 RchiOBHm_Chr5g0016771 RchiOBHm_Chr5g0016801 RchiOBHm_Chr5g0016921
rosa_laevigata	RLG00000023755 RLG00000032271
rosa_multiflora	Rmu_sc0003630.1_g000004 Rmu_sc0003630.1_g000009 Rmu_sc0008053.1_g000027
rosa_roxburghii	Rroxscaffold_4G00325360 Rroxscaffold_4G00326230 Rroxscaffold_6G00405050
rosa_rugosa	Rorug03G0156700
rosa_samantha	Rh5BG137500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	1 cut(s)	440
AfeI	AGCGCT	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	139, 191, 303, 363
AluBI	AGCT	3 cut(s)	17, 74, 271
AluI	AGCT	3 cut(s)	17, 74, 271
Alw26I	GTCTC	2 cut(s)	176, 329
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	3 cut(s)	207, 242, 476
ApeKI	GCWGC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	348, 401
BalI	TGGCCA	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	3 cut(s)	122, 164, 404
BcoDI	GTCTC	2 cut(s)	176, 329
BfaI	CTAG	1 cut(s)	272
BfoI	RGCGCY	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	418
BmsI	GCATC	2 cut(s)	46, 475
BpuEI	CTTGAG	2 cut(s)	60, 75
Bse1I	ACTGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	17
BshFI	GGCC	3 cut(s)	209, 244, 478
BsmAI	GTCTC	2 cut(s)	176, 329
BsmI	GAATGC	1 cut(s)	298
BsnI	GGCC	3 cut(s)	209, 244, 478
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	3 cut(s)	209, 244, 478
BspLI	GGNNCC	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	429
BssMI	GATC	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	187
BstAPI	GCANNNNNTGC	2 cut(s)	34, 289
BstC8I	GCNNGC	2 cut(s)	351, 452
BstDEI	CTNAG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	2 cut(s)	176, 329
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 114, 206, 289
BstNSI	RCATGY	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	104
BsuRI	GGCC	3 cut(s)	209, 244, 478
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	351, 452
CfoI	GCGC	1 cut(s)	117
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	3 cut(s)	34, 226, 451
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	478
Eco47III	AGCGCT	1 cut(s)	116
EcoT22I	ATGCAT	2 cut(s)	39, 300
FaeI	CATG	3 cut(s)	37, 229, 454
FaiI	YATR	6 cut(s)	35, 48, 227, 251, 452, 483
FatI	CATG	3 cut(s)	33, 225, 450
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	118
GsaI	CCCAGC	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	3 cut(s)	209, 244, 478
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	3 cut(s)	37, 229, 454
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	2 cut(s)	348, 401
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	4 cut(s)	269, 369, 386, 398
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	5 cut(s)	28, 37, 283, 298, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 114, 206, 289
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	3 cut(s)	37, 229, 454
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	8 cut(s)	3, 27, 123, 191, 330, 442, 458, 474
Lsp1109I	GCAGC	1 cut(s)	104
LweI	GCATC	2 cut(s)	46, 475
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	137, 315
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	1 cut(s)	103
MluNI	TGGCCA	1 cut(s)	209
MnlI	CCTC	4 cut(s)	15, 99, 148, 468
Mox20I	TGGCCA	1 cut(s)	209
Mph1103I	ATGCAT	2 cut(s)	39, 300
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	2 cut(s)	165, 384
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	298
MwoI	GCNNNNNNNGC	4 cut(s)	34, 114, 206, 289
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	3 cut(s)	37, 229, 454
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	354
NsiI	ATGCAT	2 cut(s)	39, 300
NspI	RCATGY	1 cut(s)	454
PaeI	GCATGC	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	478
PctI	GAATGC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	165, 384
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	1 cut(s)	202
SetI	ASST	6 cut(s)	19, 26, 76, 273, 361, 375
SfaNI	GCATC	2 cut(s)	46, 475
SmlI	CTYRAG	2 cut(s)	75, 90
SmoI	CTYRAG	2 cut(s)	75, 90
SphI	GCATGC	1 cut(s)	454
Sse9I	AATT	1 cut(s)	103
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	378
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	165, 384
Tru9I	TTAA	2 cut(s)	165, 384
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	1 cut(s)	242
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	2 cut(s)	39, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.