Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014841

Physical Location & Seq

Genomic Coordinates Reverse (-)

57080842 .. 57081797

Gene Structure 956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00325360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGATGGCGAGAAGTTACGAGAAAAAACTGGCTAGTCACAAGGGATCTGTCGAGACAGCAGCCAGGATCTTTACCACGGCAGACTTCAAGCAGGCCACAAACAATTACCACAGAGATGGAATCCTTGGTGAAGGAGGTTACGGAACAGTTTACAAAGGAGTACTTCCGGATAATAAATTGAAATTCACTGCCAAAGTATCGGACTTTGGAGCTTTAAAATTGGTTCCTGAAGATCAAGATCAACTGTCAACTTTAGTGCAAGAAACAATGGGATATTTAGACCCTGAATATCTTCAATCAAACACACTCACAGAAAAGAGTGACGTCTATAGTTTTGGTGTTGTACTTGTGGAGCTACTAACAAGCAGAAGGGCACTTTCTTTAGACAAGCCAGAAGAGGAGCGAAGCCTAGCGAACGTCTTTGTTTGTGCAGTGGAAGATGGTTTATTGAAGCACATACTTGATGAAGAAGTAGTTGAGGACGGACATTTTGAGACTGTTGAAAAAGTTGCCGATCTGGCCAAAAGATGTCTAAGCATGAAAGGGAGAGAAAGGCCAACTATGAGAGAAGTAGCAAGGGAGCTAGAAAGATTGCAAATTTTGCCAAAGTATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

205

Amino Acids

23.09

Weight (kDa)

5.38

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	61 - 192	6.9e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	62 - 195	1.5e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014841)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324591 RchiOBHm_Chr1g0336161 RchiOBHm_Chr3g0476711 RchiOBHm_Chr3g0476731 RchiOBHm_Chr5g0016771 RchiOBHm_Chr5g0016801 RchiOBHm_Chr5g0016921
rosa_laevigata	RLG00000023755 RLG00000032271
rosa_multiflora	Rmu_sc0003630.1_g000004 Rmu_sc0003630.1_g000009 Rmu_sc0008053.1_g000027
rosa_roxburghii	Rroxscaffold_4G00325360 Rroxscaffold_4G00326230 Rroxscaffold_6G00405050
rosa_rugosa	Rorug03G0156700
rosa_samantha	Rh5BG137500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	327
AccIII	TCCGGA	1 cut(s)	166
AclWI	GGATC	2 cut(s)	52, 74
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	182, 597
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	2 cut(s)	162, 345
AgsI	TTSAA	5 cut(s)	88, 181, 296, 451, 503
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	212, 355, 583
AluI	AGCT	3 cut(s)	212, 355, 583
Alw26I	GTCTC	2 cut(s)	47, 488
AlwI	GGATC	2 cut(s)	52, 74
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	3 cut(s)	93, 519, 554
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	182, 597
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
Asp700I	GAANNNNTTC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	521
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	110, 434
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	47, 488
BfaI	CTAG	3 cut(s)	33, 410, 584
BfmI	CTRYAG	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	518
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
BmcAI	AGTACT	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	75, 124
BsaWI	WCCGGW	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	2 cut(s)	75, 124
BseJI	GATNNNNATC	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	3 cut(s)	95, 521, 556
BsiSI	CCGG	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	47, 488
BsnI	GGCC	3 cut(s)	95, 521, 556
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	5 cut(s)	44, 66, 232, 238, 514
BspANI	GGCC	3 cut(s)	95, 521, 556
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	52, 74
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	75, 124
BssMI	GATC	5 cut(s)	44, 66, 232, 238, 514
BssNI	GRCGYC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	148, 246, 499
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	533
BstDSI	CCRYGG	1 cut(s)	75
BstKTI	GATC	5 cut(s)	47, 69, 235, 241, 517
BstMAI	GTCTC	2 cut(s)	47, 488
BstMBI	GATC	5 cut(s)	44, 66, 232, 238, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 601
BstNI	CCWGG	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	71
BstX2I	RGATCY	2 cut(s)	44, 66
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	2 cut(s)	44, 66
BsuRI	GGCC	3 cut(s)	95, 521, 556
BtgI	CCRYGG	1 cut(s)	75
BtsI	GCAGTG	2 cut(s)	186, 438
BtsIMutI	CAGTG	2 cut(s)	186, 438
Cac8I	GCNNGC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	161, 344
CviAII	CATG	1 cut(s)	538
CviQI	GTAC	2 cut(s)	161, 344
DdeI	CTNAG	1 cut(s)	533
DpnI	GATC	5 cut(s)	46, 68, 234, 240, 516
DpnII	GATC	5 cut(s)	44, 66, 232, 238, 514
DraI	TTTAAA	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	541
FaiI	YATR	4 cut(s)	330, 458, 539, 563
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	1 cut(s)	537
Fnu4HI	GCNGC	1 cut(s)	60
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	3 cut(s)	33, 410, 584
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	95, 521, 556
HapII	CCGG	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	541
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	151, 249
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	4 cut(s)	52, 167, 227, 236
Hpy8I	GTNNAC	2 cut(s)	151, 249
HpyAV	CCTTC	2 cut(s)	125, 363
HpyCH4III	ACNGT	3 cut(s)	148, 246, 499
HpyCH4IV	ACGT	2 cut(s)	324, 417
HpyCH4V	TGCA	3 cut(s)	259, 431, 595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 601
HpyF3I	CTNAG	1 cut(s)	533
HpySE526I	ACGT	2 cut(s)	324, 417
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	1 cut(s)	541
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	44, 66, 232, 238, 514
LmnI	GCTCC	4 cut(s)	209, 352, 400, 580
LpnPI	CCDG	9 cut(s)	14, 49, 76, 77, 180, 240, 297, 405, 503
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	3 cut(s)	33, 410, 584
MaeII	ACGT	2 cut(s)	324, 417
MaeIII	GTNAC	4 cut(s)	14, 35, 137, 320
MalI	GATC	5 cut(s)	46, 68, 234, 240, 516
MboI	GATC	5 cut(s)	44, 66, 232, 238, 514
MboII	GAAGA	5 cut(s)	242, 284, 407, 449, 479
MflI	RGATCY	2 cut(s)	44, 66
MhlI	GDGCHC	1 cut(s)	376
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	5 cut(s)	103, 176, 182, 218, 597
MluNI	TGGCCA	1 cut(s)	521
MnlI	CCTC	3 cut(s)	128, 391, 472
Mox20I	TGGCCA	1 cut(s)	521
MroI	TCCGGA	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	521
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	518, 601
NdeII	GATC	5 cut(s)	44, 66, 232, 238, 514
NlaIII	CATG	1 cut(s)	541
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	35, 320
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	225
PsuI	RGATCY	2 cut(s)	44, 66
RsaI	GTAC	2 cut(s)	162, 345
RsaNI	GTAC	2 cut(s)	161, 344
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	5 cut(s)	44, 66, 232, 238, 514
ScaI	AGTACT	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	6 cut(s)	139, 214, 327, 357, 420, 585
SfcI	CTRYAG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	5 cut(s)	103, 176, 182, 218, 597
SspMI	CTAG	3 cut(s)	33, 410, 584
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	148, 246, 499
TaiI	ACGT	2 cut(s)	327, 420
TaqI	TCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	103, 176, 182, 218, 597
TatI	WGTACW	2 cut(s)	160, 343
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	2 cut(s)	193, 438
TseFI	GTSAC	2 cut(s)	35, 320
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	2 cut(s)	35, 320
TspDTI	ATGAA	2 cut(s)	480, 554
TspGWI	ACGGA	2 cut(s)	156, 498
TspRI	CASTG	2 cut(s)	193, 438
XapI	RAATTY	2 cut(s)	182, 597
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	3 cut(s)	33, 410, 584
ZraI	GACGTC	1 cut(s)	325
ZrmI	AGTACT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.