Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003630.1

Orthogroup ID

OG0014841

Physical Location & Seq

Genomic Coordinates Forward (+)

32514 .. 33035

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003630.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ctgacagagaagagtgatgtctgggttgtccttgtggagctaataacgagtcaagtggcaatttcttacaagaagcctgaggcagagagaaacctagcaaacgtttttgttacgtcggtggtagagaatcgcttggctcagattcttgatcatgaaataatcaaagagggaagttttgaaatagctgaacaagtggcccatctcgccaaaagatgtttaagtttgaaaggaggggataggcctaccatgaaagaagtagctatggagctagagggtattttggcagttatggcaaagcatccggggggaaagcctgactcctctcctaaagagaccgactacttgcttgcggagtcaccttcaaacgtttacgctgttgatgttagaggtgatgaaggtgaagtcatgaccagtatcgattacgaccagagcatgcagaatcaatcccagatgatgaagccttatgacggtgggagcactacaacaaaattgggtattaatgactactgcattggtcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

173

Amino Acids

19.03

Weight (kDa)

4.83

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014841)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324591 RchiOBHm_Chr1g0336161 RchiOBHm_Chr3g0476711 RchiOBHm_Chr3g0476731 RchiOBHm_Chr5g0016771 RchiOBHm_Chr5g0016801 RchiOBHm_Chr5g0016921
rosa_laevigata	RLG00000023755 RLG00000032271
rosa_multiflora	Rmu_sc0003630.1_g000004 Rmu_sc0003630.1_g000009 Rmu_sc0008053.1_g000027
rosa_roxburghii	Rroxscaffold_4G00325360 Rroxscaffold_4G00326230 Rroxscaffold_6G00405050
rosa_rugosa	Rorug03G0156700
rosa_samantha	Rh5BG137500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	350
AclI	AACGTT	2 cut(s)	102, 366
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	179, 226, 363
AluBI	AGCT	4 cut(s)	40, 185, 260, 268
AluI	AGCT	4 cut(s)	40, 185, 260, 268
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	1 cut(s)	326
AoxI	GGCC	2 cut(s)	195, 239
AseI	ATTAAT	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	3 cut(s)	348, 401, 410
AxyI	CCTNAGG	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	479
BccI	CCATC	1 cut(s)	207
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	2 cut(s)	95, 269
Bme1390I	CCNGG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	302
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	411
Bse21I	CCTNAGG	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	69, 152
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	197, 241
BshVI	ATCGAT	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	479
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	197, 241
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	2 cut(s)	197, 241
BspCNI	CTCAG	2 cut(s)	70, 151
BspDI	ATCGAT	1 cut(s)	417
BspHI	TCATGA	2 cut(s)	151, 405
BspTNI	GGTCTC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	348, 434
BstDEI	CTNAG	2 cut(s)	78, 138
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 290
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	197, 241
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	2 cut(s)	348, 434
CciI	TCATGA	2 cut(s)	151, 405
Cfr13I	GGNCC	1 cut(s)	196
ClaI	ATCGAT	1 cut(s)	417
CviAII	CATG	4 cut(s)	152, 247, 406, 433
DdeI	CTNAG	2 cut(s)	78, 138
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	326
Eco81I	CCTNAGG	1 cut(s)	78
FaeI	CATG	4 cut(s)	155, 250, 409, 436
FaiI	YATR	7 cut(s)	153, 248, 263, 290, 407, 434, 465
FatI	CATG	4 cut(s)	151, 246, 405, 432
FbaI	TGATCA	1 cut(s)	148
FokI	GGATG	1 cut(s)	285
FspBI	CTAG	2 cut(s)	95, 269
HaeIII	GGCC	2 cut(s)	197, 241
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	4 cut(s)	155, 250, 409, 436
HinfI	GANTC	6 cut(s)	49, 127, 142, 317, 353, 439
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	3 cut(s)	348, 401, 410
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	3 cut(s)	146, 152, 406
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	369, 389
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	3 cut(s)	102, 113, 366
HpyCH4V	TGCA	2 cut(s)	436, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 290
HpyF3I	CTNAG	2 cut(s)	78, 138
HpySE526I	ACGT	3 cut(s)	102, 113, 366
Hsp92II	CATG	4 cut(s)	155, 250, 409, 436
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	3 cut(s)	37, 265, 474
LpnPI	CCDG	7 cut(s)	7, 90, 315, 327, 424, 440, 461
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	95, 269
MaeII	ACGT	3 cut(s)	102, 113, 366
MaeIII	GTNAC	3 cut(s)	109, 354, 515
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	2 cut(s)	60, 488
MlyI	GAGTC	3 cut(s)	58, 311, 362
MnlI	CCTC	6 cut(s)	73, 160, 224, 265, 331, 380
MseI	TTAA	2 cut(s)	218, 498
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	203, 290
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	4 cut(s)	155, 250, 409, 436
NmuCI	GTSAC	2 cut(s)	354, 515
NspI	RCATGY	1 cut(s)	436
PaeI	GCATGC	1 cut(s)	436
PagI	TCATGA	2 cut(s)	151, 405
PceI	AGGCCT	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	127, 142, 439
PleI	GAGTC	3 cut(s)	57, 311, 361
PpsI	GAGTC	3 cut(s)	57, 311, 361
PshBI	ATTAAT	1 cut(s)	498
Psp1406I	AACGTT	2 cut(s)	102, 366
PspPI	GGNCC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	218, 498
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	3 cut(s)	58, 311, 362
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	1 cut(s)	307
SphI	GCATGC	1 cut(s)	436
Sse9I	AATT	2 cut(s)	60, 488
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	2 cut(s)	95, 269
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	3 cut(s)	105, 116, 369
TaqI	TCGA	1 cut(s)	417
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	2 cut(s)	60, 488
TfiI	GAWTC	3 cut(s)	127, 142, 439
Tru1I	TTAA	2 cut(s)	218, 498
Tru9I	TTAA	2 cut(s)	218, 498
TseFI	GTSAC	2 cut(s)	354, 515
Tsp45I	GTSAC	2 cut(s)	354, 515
TspDTI	ATGAA	4 cut(s)	168, 263, 408, 470
VspI	ATTAAT	1 cut(s)	498
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	2 cut(s)	95, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.