RchiOBHm_Chr1g0336161
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014841
Physical Location & Seq
Reverse (-)
27839992 .. 27841023
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56412

Sequence Viewer

Length: 573 bp
ATGGGATATTTAGACCCTGAATATCTTCAATCAAACACACTCACAGAAAAGAGTGACGTCTATAGTTTTGGTTTTGTACTTGTGGAGCTACTAACAAGCAGAATGGCACTTTCTTTAGACAGGCCAGAAGCGGAGCGGAGCCTAGCAAACGTCTTTGTTTGTGCAGTGGACAATACTTCGCTGCCCAACCATGGGCAGCACTTCCTAACCAACACTTGTGTGTCTCACTCAAGGTCCAACACGTGTGGAAGATGGTCTATTGATGAAGAAGTAGTTAACGACGGAAATTTTGAGACAGTTGAAAAAGTTGCCGATCTGGCCAAAAGATGTATAAGCATGAAAGGGAGAGAAAGGCCAACTATGAGGGAAGTAACAAGGGAGCTAGAAAGACTGCAAATATTGCCAAAGCATTCAGGGGGTGAAAAGCCTGATTCTTCTCCTAAAGAGACTGACTACTTGCTTGCATCACCTTCAAACGCTTACGTTGTCGATGTTAAGGGTGAAGGCGATGTGGTTCCATTACTACCAGTATTGAGTATGACCAGAGCAAGCAAAATCAAGCCCAAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

190

Amino Acids

21.15

Weight (kDa)

5.63

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 125 1.5e-08 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccBSI CCGCTC 1 cut(s) 136
AciI CCGC 2 cut(s) 131, 136
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 286
AcvI CACGTG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 191, 192
AflIII ACRYGT 2 cut(s) 240, 242
AgsI TTSAA 3 cut(s) 29, 302, 474
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 2 cut(s) 88, 382
AluI AGCT 2 cut(s) 88, 382
Alw26I GTCTC 3 cut(s) 228, 287, 440
AoxI GGCC 3 cut(s) 122, 318, 353
ApeKI GCWGC 2 cut(s) 181, 196
ApoI RAATTY 1 cut(s) 286
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
Asp700I GAANNNNTTC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 431, 459, 512
AvaII GGWCC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 320
BbrPI CACGTG 1 cut(s) 243
BbvI GCAGC 2 cut(s) 168, 208
BccI CCATC 1 cut(s) 246
BcoDI GTCTC 3 cut(s) 228, 287, 440
BfaI CTAG 2 cut(s) 143, 383
BfmI CTRYAG 1 cut(s) 61
BglI GCCNNNNNGGC 1 cut(s) 317
BisI GCNGC 2 cut(s) 182, 197
BlsI GCNGC 2 cut(s) 183, 198
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 140, 516
BmsI GCATC 1 cut(s) 473
BpuEI CTTGAG 1 cut(s) 214
BsaAI YACGTR 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 192
Bse1I ACTGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 191, 192
BseNI ACTGG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 168, 208
BsgI GTGCAG 1 cut(s) 183
BshFI GGCC 3 cut(s) 124, 320, 355
BslI CCNNNNNNNGG 2 cut(s) 191, 192
BsmAI GTCTC 3 cut(s) 228, 287, 440
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 3 cut(s) 124, 320, 355
Bsp143I GATC 1 cut(s) 313
Bsp19I CCATGG 1 cut(s) 190
BspACI CCGC 2 cut(s) 131, 136
BspANI GGCC 3 cut(s) 124, 320, 355
BspLI GGNNCC 2 cut(s) 140, 516
BsrBI CCGCTC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 527
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 313
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 400
BstBAI YACGTR 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 462, 550
BstDSI CCRYGG 1 cut(s) 190
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 3 cut(s) 228, 287, 440
BstMBI GATC 1 cut(s) 313
BstMWI GCNNNNNNNGC 2 cut(s) 317, 400
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 168, 208
BsuRI GGCC 3 cut(s) 124, 320, 355
BtgI CCRYGG 1 cut(s) 190
BtgZI GCGATG 1 cut(s) 522
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 462, 550
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 77
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 2 cut(s) 191, 337
CviJI RGCY 8 cut(s) 88, 124, 141, 320, 355, 382, 427, 562
CviKI_1 RGCY 8 cut(s) 88, 124, 141, 320, 355, 382, 427, 562
CviQI GTAC 1 cut(s) 77
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 234
Eco72I CACGTG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 2 cut(s) 194, 340
FaiI YATR 6 cut(s) 63, 192, 332, 338, 362, 539
FatI CATG 2 cut(s) 190, 336
Fnu4HI GCNGC 2 cut(s) 182, 197
Fsp4HI GCNGC 2 cut(s) 182, 197
FspBI CTAG 2 cut(s) 143, 383
GluI GCNGC 2 cut(s) 182, 197
HaeIII GGCC 3 cut(s) 124, 320, 355
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 194, 340
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 1 cut(s) 431
HpaI GTTAAC 1 cut(s) 277
HphI GGTGA 3 cut(s) 431, 459, 512
Hpy166II GTNNAC 2 cut(s) 169, 277
Hpy8I GTNNAC 2 cut(s) 169, 277
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 480, 497
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 4 cut(s) 57, 150, 242, 483
HpyCH4V TGCA 3 cut(s) 164, 394, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 400
HpySE526I ACGT 4 cut(s) 57, 150, 242, 483
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 194, 340
KspAI GTTAAC 1 cut(s) 277
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 4 cut(s) 85, 133, 138, 379
LpnPI CCDG 8 cut(s) 30, 106, 138, 302, 399, 441, 540, 556
Lsp1109I GCAGC 2 cut(s) 168, 208
LweI GCATC 1 cut(s) 473
MaeI CTAG 2 cut(s) 143, 383
MaeII ACGT 4 cut(s) 57, 150, 242, 483
MaeIII GTNAC 2 cut(s) 53, 370
MalI GATC 1 cut(s) 315
MbiI CCGCTC 1 cut(s) 136
MboI GATC 1 cut(s) 313
MboII GAAGA 4 cut(s) 17, 261, 278, 426
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 1 cut(s) 286
MluNI TGGCCA 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 320
MseI TTAA 3 cut(s) 276, 495, 571
MslI CAYNNNNRTG 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 409
MwoI GCNNNNNNNGC 2 cut(s) 317, 400
NcoI CCATGG 1 cut(s) 190
NdeII GATC 1 cut(s) 313
NlaIII CATG 2 cut(s) 194, 340
NlaIV GGNNCC 2 cut(s) 140, 516
NmuCI GTSAC 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 218
PctI GAATGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 2 cut(s) 183, 198
PmaCI CACGTG 1 cut(s) 243
PmlI CACGTG 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 243
PspCI CACGTG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 140, 516
PspPI GGNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 276, 495, 571
SatI GCNGC 2 cut(s) 182, 197
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 234
SetI ASST 8 cut(s) 60, 90, 153, 236, 245, 384, 472, 486
SfaNI GCATC 1 cut(s) 473
SfcI CTRYAG 1 cut(s) 61
SinI GGWCC 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 1 cut(s) 286
SsiI CCGC 2 cut(s) 131, 136
SspI AATATT 1 cut(s) 399
SspMI CTAG 2 cut(s) 143, 383
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 4 cut(s) 60, 153, 245, 486
TaqI TCGA 1 cut(s) 489
TasI AATT 1 cut(s) 286
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 276, 495, 571
Tru9I TTAA 3 cut(s) 276, 495, 571
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 181, 196
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 279, 353
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 2 cut(s) 143, 383
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.