Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014841

Physical Location & Seq

Genomic Coordinates Reverse (-)

22695746 .. 22697661

Gene Structure 1916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44210

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGTCGGAATGTGTCGATCATACGATCAATGGTACTTCATCTGGAGGTTACACTTGCCGGTGCACGACAGGCTACGATGGGAACCCATACCTCTCAGATGGTTGCCAAGATATTAATGAGTGCCTGCTAGATCCGAACCCATGCAAAAAAGGAAAGTGCATAAATTTACCCGGAACTCACACTTGTACATGTGATAGTGGGTACAGATTAAATGAAAACAAGACTTGCGTGAAAGGAGGCAAAGGAAAGAGCACTGTCTTGAAAGTTTCATTAGGTATAAGTATAAGCATGTTTGTCTTACTAGTTGGAATTTTTTGGTTATATTGTGGAATGAAGAGAAGAAAGTTCAAACAACTGAAAGAAATGTACTTCAAAGAAAATGGTGGCGAGAAGTTACGAGAAAAACTGGCTAGTCACAAGGGATCTGTCGAGACAGCAGCCAGGATCTTTACCTCGGCAGAACTCAAGCAGGCCACAAACAATTACCACAGAGATAAGATCCTTGGTGAAGGAGCTTATGGAACAGTTTACAAAGGAGTACTTGCGGATAATAAAGTGGTAGCCATAAAGAAGTCCAAAATCATGGCCAAGTCCCAGACTGATCAGTTTGTTAATGAGGTGCTTGTTCTCTCTCAAATAAACCATAGAAATGTGGTGAAGCTTTTAGGTTGCTGTTTAGAGACAGAAATGCCTTTACTAGTTTATGAGTACGTTAGCAATGGCACTCTTTATGACCACGTTCATAAAAGAAATGGAAAAGGCCCACTTTCATTAAGATTGCGATTGAAGATTGCAGCAGAAACAGCAGAATCACTTGCGTACTTGCACTACTCCACATCAATGCAAATCGTGCACCGAGATGTGAAAGCAACTAATATACTACTGGACGAGAAATTCACGGCCAAAGTATCGGACTTTGGAGCTTCAAAATTGGTTCCTGAAGATCAAGATCAACTATCAACTTTAGTGCAAGGAACAATGGGATACTTGGACCCTGAATATCTTCAATCAAACACACTCACAGAAAAGAGTGACGTCTATAGTTTTGGTGTTGTACTTGTGGAGCTACTAACAAGCAGAAGGGCACTTTCTTTAGACAAGCCAGAAGCGGAGCGGAGCCTAGCAAACGTCTTTGTTTGTGCAGTGGAAGATGGTCTATTGAAGCACATACTTGATGAGGAAGTAGTTAAGGACGGACATTTTGAGACTGTTGAAAAAGTTGCCGATCTGGCCAAAAGATGTCTAAGCATGAAAGGGAGAGAAAGGCCAACTATGAGGGAAGTAGCAAGGGAGCTAGAAGGACTGCAAATTTTGCCAAAGCATTCAGGGGGTGGAAAGCCTGATTCTTCTCCTAAACAGACTGACTACTTGCTTGCATCACCTTCAAACGCTTATGTTGTCGATGTTAAGGGTGAAGGCGATGTTGGTTCCATTACAACCAGTATTGAGTACGACCAGAGCATGCAAAATCAAGCCCAAGTGTTAAGGCCTGATGATGCTGGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK cEGF

Protein Analysis

502

Amino Acids

55.45

Weight (kDa)

7.81

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EGF_CA	PF07645	37 - 76	8.7e-08	Calcium-binding EGF domain
Pkinase	PF00069	162 - 429	5.4e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	164 - 432	1.6e-50	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014841)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324591 RchiOBHm_Chr1g0336161 RchiOBHm_Chr3g0476711 RchiOBHm_Chr3g0476731 RchiOBHm_Chr5g0016771 RchiOBHm_Chr5g0016801 RchiOBHm_Chr5g0016921
rosa_laevigata	RLG00000023755 RLG00000032271
rosa_multiflora	Rmu_sc0003630.1_g000004 Rmu_sc0003630.1_g000009 Rmu_sc0008053.1_g000027
rosa_roxburghii	Rroxscaffold_4G00325360 Rroxscaffold_4G00326230 Rroxscaffold_6G00405050
rosa_rugosa	Rorug03G0156700
rosa_samantha	Rh5BG137500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1038
AccBSI	CCGCTC	1 cut(s)	1114
AciI	CCGC	3 cut(s)	545, 1109, 1114
AclWI	GGATC	4 cut(s)	125, 430, 452, 493
AcoI	YGGCCR	3 cut(s)	585, 900, 1230
AcsI	RAATTY	4 cut(s)	163, 309, 893, 1308
AcuI	CTGAAG	1 cut(s)	960
AcyI	GRCGYC	1 cut(s)	1035
AfaI	GTAC	9 cut(s)	34, 187, 203, 368, 540, 710, 821, 1056, 1451
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	9 cut(s)	262, 349, 373, 787, 927, 1007, 1162, 1214, 1386
AhlI	ACTAGT	2 cut(s)	301, 697
AjnI	CCWGG	1 cut(s)	440
AjuI	GAANNNNNNNTTGG	2 cut(s)	1407, 1439
AluBI	AGCT	5 cut(s)	515, 661, 923, 1066, 1294
AluI	AGCT	5 cut(s)	515, 661, 923, 1066, 1294
Alw21I	GWGCWC	3 cut(s)	65, 254, 855
Alw26I	GTCTC	3 cut(s)	425, 674, 1199
Alw44I	GTGCAC	2 cut(s)	61, 851
AlwI	GGATC	4 cut(s)	125, 430, 452, 493
AoxI	GGCC	7 cut(s)	471, 585, 760, 900, 1230, 1265, 1487
ApaLI	GTGCAC	2 cut(s)	61, 851
ApeKI	GCWGC	2 cut(s)	437, 794
ApoI	RAATTY	4 cut(s)	163, 309, 893, 1308
ArsI	GACNNNNNNTTYG	2 cut(s)	1184, 1216
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	1002
AspS9I	GGNCC	2 cut(s)	761, 991
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	4 cut(s)	518, 667, 1371, 1424
AvaII	GGWCC	1 cut(s)	991
BaeGI	GKGCMC	3 cut(s)	65, 855, 1087
BalI	TGGCCA	2 cut(s)	587, 1232
Bbv12I	GWGCWC	3 cut(s)	65, 254, 855
BbvI	GCAGC	2 cut(s)	449, 806
BccI	CCATC	3 cut(s)	71, 92, 1145
BceAI	ACGGC	1 cut(s)	915
BciT130I	CCWGG	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	977
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	3 cut(s)	425, 674, 1199
BcuI	ACTAGT	2 cut(s)	301, 697
BfaI	CTAG	6 cut(s)	128, 302, 411, 698, 1121, 1295
BfmI	CTRYAG	1 cut(s)	1039
BfuI	GTATCC	1 cut(s)	977
BglI	GCCNNNNNGGC	1 cut(s)	1229
BisI	GCNGC	2 cut(s)	438, 795
BlsI	GCNGC	2 cut(s)	439, 796
BmcAI	AGTACT	1 cut(s)	540
Bme1390I	CCNGG	2 cut(s)	171, 442
Bme18I	GGWCC	1 cut(s)	991
BmgT120I	GGNCC	2 cut(s)	761, 991
BmiI	GGNNCC	5 cut(s)	83, 936, 993, 1118, 1429
BmrFI	CCNGG	2 cut(s)	171, 442
BmsI	GCATC	2 cut(s)	1385, 1486
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	948
BsaHI	GRCGYC	1 cut(s)	1035
BsaJI	CCNNGG	2 cut(s)	453, 502
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	3 cut(s)	411, 888, 1440
Bse3DI	GCAATG	1 cut(s)	724
Bse8I	GATNNNNATC	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	2 cut(s)	453, 502
BseJI	GATNNNNATC	1 cut(s)	948
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	3 cut(s)	411, 888, 1440
BseSI	GKGCMC	3 cut(s)	65, 855, 1087
BseXI	GCAGC	2 cut(s)	449, 806
BsgI	GTGCAG	1 cut(s)	1161
BshFI	GGCC	7 cut(s)	473, 587, 762, 902, 1232, 1267, 1489
BsiHKAI	GWGCWC	3 cut(s)	65, 254, 855
BsiSI	CCGG	2 cut(s)	58, 171
BslFI	GGGAC	1 cut(s)	577
BsmAI	GTCTC	3 cut(s)	425, 674, 1199
BsmFI	GGGAC	1 cut(s)	577
BsmI	GAATGC	1 cut(s)	1321
BsnI	GGCC	7 cut(s)	473, 587, 762, 902, 1232, 1267, 1489
Bsp1286I	GDGCHC	4 cut(s)	65, 254, 855, 1087
Bsp1407I	TGTACA	1 cut(s)	185
BspACI	CCGC	3 cut(s)	545, 1109, 1114
BspANI	GGCC	7 cut(s)	473, 587, 762, 902, 1232, 1267, 1489
BspCNI	CTCAG	1 cut(s)	107
BspLI	GGNNCC	5 cut(s)	83, 936, 993, 1118, 1429
BspPI	GGATC	4 cut(s)	125, 430, 452, 493
BsrBI	CCGCTC	1 cut(s)	1114
BsrDI	GCAATG	1 cut(s)	724
BsrFI	RCCGGY	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	411, 888, 1440
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	453, 502
BssNI	GRCGYC	1 cut(s)	1035
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	442
Bst4CI	ACNGT	3 cut(s)	256, 526, 1210
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	1035
BstAPI	GCANNNNNTGC	2 cut(s)	850, 1312
BstAUI	TGTACA	1 cut(s)	185
BstC8I	GCNNGC	4 cut(s)	125, 471, 1374, 1463
BstDEI	CTNAG	2 cut(s)	94, 1244
BstMAI	GTCTC	3 cut(s)	425, 674, 1199
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 803, 850, 1229, 1312
BstNI	CCWGG	1 cut(s)	442
BstNSI	RCATGY	3 cut(s)	192, 292, 1465
BstSCI	CCNGG	2 cut(s)	169, 440
BstSFI	CTRYAG	1 cut(s)	1039
BstSLI	GKGCMC	3 cut(s)	65, 855, 1087
BstV1I	GCAGC	2 cut(s)	449, 806
BstX2I	RGATCY	4 cut(s)	130, 422, 444, 498
BstXI	CCANNNNNNTGG	1 cut(s)	583
BstYI	RGATCY	4 cut(s)	130, 422, 444, 498
BsuI	GTATCC	1 cut(s)	977
BsuRI	GGCC	7 cut(s)	473, 587, 762, 902, 1232, 1267, 1489
BtgZI	GCGATG	1 cut(s)	1434
BtsI	GCAGTG	1 cut(s)	1149
BtsIMutI	CAGTG	2 cut(s)	252, 1149
Cac8I	GCNNGC	4 cut(s)	125, 471, 1374, 1463
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	761, 991
Csp6I	GTAC	9 cut(s)	33, 186, 202, 367, 539, 709, 820, 1055, 1450
CviAII	CATG	6 cut(s)	141, 189, 289, 583, 1249, 1462
CviQI	GTAC	9 cut(s)	33, 186, 202, 367, 539, 709, 820, 1055, 1450
DdeI	CTNAG	2 cut(s)	94, 1244
EaeI	YGGCCR	3 cut(s)	585, 900, 1230
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	1489
Eco47I	GGWCC	1 cut(s)	991
Eco57I	CTGAAG	1 cut(s)	960
EcoRII	CCWGG	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	6 cut(s)	144, 192, 292, 586, 1252, 1465
FalI	AAGNNNNNCTT	4 cut(s)	525, 557, 750, 782
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	6 cut(s)	140, 188, 288, 582, 1248, 1461
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	438, 795
Fsp4HI	GCNGC	2 cut(s)	438, 795
FspBI	CTAG	6 cut(s)	128, 302, 411, 698, 1121, 1295
GluI	GCNGC	2 cut(s)	438, 795
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	7 cut(s)	473, 587, 762, 902, 1232, 1267, 1489
HapII	CCGG	2 cut(s)	58, 171
Hin1I	GRCGYC	1 cut(s)	1035
Hin1II	CATG	6 cut(s)	144, 192, 292, 586, 1252, 1465
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	2 cut(s)	809, 1343
HpaII	CCGG	2 cut(s)	58, 171
HphI	GGTGA	4 cut(s)	518, 667, 1371, 1424
Hpy166II	GTNNAC	3 cut(s)	63, 529, 853
Hpy188I	TCNGA	4 cut(s)	7, 97, 135, 913
Hpy188III	TCNNGA	5 cut(s)	42, 259, 430, 938, 947
Hpy8I	GTNNAC	3 cut(s)	63, 529, 853
HpyAV	CCTTC	5 cut(s)	503, 1074, 1292, 1392, 1409
HpyCH4III	ACNGT	3 cut(s)	256, 526, 1210
HpyCH4IV	ACGT	4 cut(s)	711, 738, 1035, 1128
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 803, 850, 1229, 1312
HpyF3I	CTNAG	2 cut(s)	94, 1244
HpySE526I	ACGT	4 cut(s)	711, 738, 1035, 1128
Hsp92I	GRCGYC	1 cut(s)	1035
Hsp92II	CATG	6 cut(s)	144, 192, 292, 586, 1252, 1465
Ksp22I	TGATCA	1 cut(s)	601
LmnI	GCTCC	6 cut(s)	512, 920, 1063, 1111, 1116, 1291
Lsp1109I	GCAGC	2 cut(s)	449, 806
LweI	GCATC	2 cut(s)	1385, 1486
MaeI	CTAG	6 cut(s)	128, 302, 411, 698, 1121, 1295
MaeII	ACGT	4 cut(s)	711, 738, 1035, 1128
MaeIII	GTNAC	4 cut(s)	47, 393, 413, 1031
MbiI	CCGCTC	1 cut(s)	1114
MboII	GAAGA	7 cut(s)	346, 351, 799, 953, 995, 1160, 1338
MflI	RGATCY	4 cut(s)	130, 422, 444, 498
MhlI	GDGCHC	4 cut(s)	65, 254, 855, 1087
MlsI	TGGCCA	2 cut(s)	587, 1232
MluCI	AATT	6 cut(s)	163, 309, 481, 893, 929, 1308
MluNI	TGGCCA	2 cut(s)	587, 1232
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	7 cut(s)	38, 101, 230, 463, 610, 1171, 1269
Mox20I	TGGCCA	2 cut(s)	587, 1232
MroXI	GAANNNNTTC	1 cut(s)	1002
MscI	TGGCCA	2 cut(s)	587, 1232
MseI	TTAA	7 cut(s)	114, 209, 612, 773, 1188, 1407, 1484
MslI	CAYNNNNRTG	3 cut(s)	648, 839, 858
Msp20I	TGGCCA	2 cut(s)	587, 1232
MspI	CCGG	2 cut(s)	58, 171
MspR9I	CCNGG	2 cut(s)	171, 442
Mva1269I	GAATGC	1 cut(s)	1321
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	5 cut(s)	69, 803, 850, 1229, 1312
NciI	CCSGG	1 cut(s)	171
NlaIII	CATG	6 cut(s)	144, 192, 292, 586, 1252, 1465
NlaIV	GGNNCC	5 cut(s)	83, 936, 993, 1118, 1429
NmeAIII	GCCGAG	1 cut(s)	434
NmuCI	GTSAC	2 cut(s)	413, 1031
NspI	RCATGY	3 cut(s)	192, 292, 1465
PaeI	GCATGC	1 cut(s)	1465
PceI	AGGCCT	1 cut(s)	1489
PciI	ACATGT	1 cut(s)	188
PctI	GAATGC	1 cut(s)	1321
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	2 cut(s)	809, 1343
PkrI	GCNGC	2 cut(s)	439, 796
PscI	ACATGT	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	5 cut(s)	83, 936, 993, 1118, 1429
PspPI	GGNCC	2 cut(s)	761, 991
PsuI	RGATCY	4 cut(s)	130, 422, 444, 498
RsaI	GTAC	9 cut(s)	34, 187, 203, 368, 540, 710, 821, 1056, 1451
RsaNI	GTAC	9 cut(s)	33, 186, 202, 367, 539, 709, 820, 1055, 1450
RseI	CAYNNNNRTG	3 cut(s)	648, 839, 858
SaqAI	TTAA	7 cut(s)	114, 209, 612, 773, 1188, 1407, 1484
SatI	GCNGC	2 cut(s)	438, 795
Sau96I	GGNCC	2 cut(s)	761, 991
ScaI	AGTACT	1 cut(s)	540
ScrFI	CCNGG	2 cut(s)	171, 442
SduI	GDGCHC	4 cut(s)	65, 254, 855, 1087
SfaNI	GCATC	2 cut(s)	1385, 1486
SfcI	CTRYAG	1 cut(s)	1039
SinI	GGWCC	1 cut(s)	991
SmiMI	CAYNNNNRTG	3 cut(s)	648, 839, 858
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SpeI	ACTAGT	2 cut(s)	301, 697
SphI	GCATGC	1 cut(s)	1465
Sse9I	AATT	6 cut(s)	163, 309, 481, 893, 929, 1308
SseBI	AGGCCT	1 cut(s)	1489
SsiI	CCGC	3 cut(s)	545, 1109, 1114
SspMI	CTAG	6 cut(s)	128, 302, 411, 698, 1121, 1295
StuI	AGGCCT	1 cut(s)	1489
StyD4I	CCNGG	2 cut(s)	169, 440
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	3 cut(s)	256, 526, 1210
TaiI	ACGT	4 cut(s)	714, 741, 1038, 1131
TaqI	TCGA	3 cut(s)	15, 429, 1401
TasI	AATT	6 cut(s)	163, 309, 481, 893, 929, 1308
TatI	WGTACW	4 cut(s)	185, 366, 538, 1054
TfiI	GAWTC	2 cut(s)	809, 1343
Tru1I	TTAA	7 cut(s)	114, 209, 612, 773, 1188, 1407, 1484
Tru9I	TTAA	7 cut(s)	114, 209, 612, 773, 1188, 1407, 1484
TscAI	CASTG	2 cut(s)	259, 1149
TseFI	GTSAC	2 cut(s)	413, 1031
TseI	GCWGC	2 cut(s)	437, 794
Tsp45I	GTSAC	2 cut(s)	413, 1031
TspDTI	ATGAA	7 cut(s)	27, 228, 258, 347, 731, 759, 1265
TspGWI	ACGGA	1 cut(s)	1209
TspRI	CASTG	2 cut(s)	259, 1149
VneI	GTGCAC	2 cut(s)	61, 851
VpaK11BI	GGWCC	1 cut(s)	991
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	4 cut(s)	163, 309, 893, 1308
XceI	RCATGY	3 cut(s)	192, 292, 1465
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	6 cut(s)	128, 302, 411, 698, 1121, 1295
ZraI	GACGTC	1 cut(s)	1036
ZrmI	AGTACT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.