RchiOBHm_Chr1g0340031

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009456
Physical Location & Seq
Forward (+)
31507722 .. 31511847
4126 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGACAAGTAGACAAGGACTTGGTCCATACGGATTTGATGTAGGCCAATCTGAGAAGGGATCAGTCCTCAAGGGGTTAGATATTGGTGTAAAAGGCATGCGGGTAGGAGTCCAGAAGAGATTCTTTGTTCCTCAACGATTGCTTATAGTTCCTCCTGAGCTGGCATATGGAAGCAAAGGAGTCCAAGAAATCCCTCCAAATGCAACAATAGAGGGCATATTTTATTTCCTGTGGAGCTGA

Protein Analysis

79

Amino Acids

8.66

Weight (kDa)

9.52

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 7 - 70 1.5e-10 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 10
AciI CCGC 1 cut(s) 100
AclWI GGATC 1 cut(s) 67
AluBI AGCT 2 cut(s) 160, 237
AluI AGCT 2 cut(s) 160, 237
AlwI GGATC 1 cut(s) 67
AoxI GGCC 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 23
AvaII GGWCC 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
Bpu10I CCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 53
BseMII CTCAG 2 cut(s) 42, 147
BshFI GGCC 1 cut(s) 45
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 59
BspACI CCGC 1 cut(s) 100
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 43, 148
BspPI GGATC 1 cut(s) 67
BssMI GATC 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 98, 162
BstDEI CTNAG 2 cut(s) 51, 156
BstKTI GATC 1 cut(s) 62
BstMBI GATC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 100
BsuRI GGCC 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 98, 162
Cfr13I GGNCC 1 cut(s) 23
CviAII CATG 1 cut(s) 97
CviJI RGCY 3 cut(s) 45, 160, 237
CviKI_1 RGCY 3 cut(s) 45, 160, 237
DdeI CTNAG 2 cut(s) 51, 156
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 23
FaeI CATG 1 cut(s) 100
FaiI YATR 6 cut(s) 28, 98, 146, 166, 168, 218
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 93
FauNDI CATATG 1 cut(s) 166
FblI GTMKAC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 45
Hin1II CATG 1 cut(s) 100
HinfI GANTC 3 cut(s) 108, 120, 180
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 112, 155
Hpy8I GTNNAC 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 51, 156
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 59
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 3 cut(s) 125, 146, 168
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MboII GAAGA 1 cut(s) 127
MlyI GAGTC 2 cut(s) 117, 189
MnlI CCTC 5 cut(s) 77, 141, 162, 204, 205
MroXI GAANNNNTTC 1 cut(s) 119
NdeI CATATG 1 cut(s) 166
NdeII GATC 1 cut(s) 59
NlaIII CATG 1 cut(s) 100
NspI RCATGY 1 cut(s) 100
PaeI GCATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 21
PleI GAGTC 2 cut(s) 116, 188
PpsI GAGTC 2 cut(s) 116, 188
PspPI GGNCC 1 cut(s) 23
PsyI GACNNNGTC 1 cut(s) 21
Sau3AI GATC 1 cut(s) 59
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 2 cut(s) 117, 189
SetI ASST 2 cut(s) 162, 239
SinI GGWCC 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SphI GCATGC 1 cut(s) 100
SsiI CCGC 1 cut(s) 100
TfiI GAWTC 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 45
Tth111I GACNNNGTC 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 23
XceI RCATGY 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.