Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G03580 |
| fragaria_vesca | FvH4_7g07570 |
| malus_domestica | MD02G1235200.v1.1 MD02G1235800.v1.1 |
| prunus_persica | Prupe.2G102800_v2.0.a1 Prupe.2G102800_v2.0.a1 |
| pyrus_communis | pycom02g20250 |
| rosa_chinensis | RchiOBHm_Chr1g0339001 RchiOBHm_Chr1g0343101 |
| rosa_laevigata | RLG00000029204 RLG00000029208 |
| rosa_multiflora | Rmu_sc0017585.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00313330 |
| rosa_rugosa | Rorug01G0144200.1 |
| rosa_samantha | Rh1AG160800 Rh1BG127800 Rh1CG150300 Rh1DG164000 |
| rosa_wichuraiana | Rw1G013420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1219 |
| AciI | CCGC | 1 cut(s) | 1177 |
| AclWI | GGATC | 3 cut(s) | 1210, 1258, 1557 |
| AcoI | YGGCCR | 1 cut(s) | 160 |
| AcsI | RAATTY | 5 cut(s) | 740, 765, 884, 995, 1108 |
| AcuI | CTGAAG | 1 cut(s) | 348 |
| AcvI | CACGTG | 1 cut(s) | 1391 |
| AfaI | GTAC | 6 cut(s) | 102, 353, 578, 734, 827, 1020 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 252, 384, 430, 629 |
| AflIII | ACRYGT | 1 cut(s) | 1243 |
| AgsI | TTSAA | 7 cut(s) | 57, 585, 610, 680, 739, 848, 995 |
| AjnI | CCWGG | 1 cut(s) | 1251 |
| AleI | CACNNNNGTG | 1 cut(s) | 914 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 321, 353 |
| AluBI | AGCT | 3 cut(s) | 24, 302, 1058 |
| AluI | AGCT | 3 cut(s) | 24, 302, 1058 |
| Alw21I | GWGCWC | 2 cut(s) | 274, 921 |
| AlwI | GGATC | 3 cut(s) | 1210, 1258, 1557 |
| AoxI | GGCC | 2 cut(s) | 160, 230 |
| ApeKI | GCWGC | 2 cut(s) | 21, 1571 |
| ApoI | RAATTY | 5 cut(s) | 740, 765, 884, 995, 1108 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 33, 59, 65, 91 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 440 |
| AspS9I | GGNCC | 2 cut(s) | 231, 1249 |
| AsuHPI | GGTGA | 2 cut(s) | 413, 509 |
| AvaII | GGWCC | 1 cut(s) | 1249 |
| BalI | TGGCCA | 1 cut(s) | 162 |
| BbrPI | CACGTG | 1 cut(s) | 1391 |
| BbsI | GAAGAC | 2 cut(s) | 69, 1446 |
| Bbv12I | GWGCWC | 2 cut(s) | 274, 921 |
| BbvI | GCAGC | 2 cut(s) | 33, 1558 |
| BccI | CCATC | 1 cut(s) | 775 |
| BceAI | ACGGC | 1 cut(s) | 1584 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1316, 1350 |
| BciT130I | CCWGG | 1 cut(s) | 1253 |
| BclI | TGATCA | 3 cut(s) | 120, 369, 1116 |
| BfaI | CTAG | 2 cut(s) | 90, 489 |
| BfmI | CTRYAG | 1 cut(s) | 1444 |
| BisI | GCNGC | 2 cut(s) | 22, 1572 |
| BlsI | GCNGC | 2 cut(s) | 23, 1573 |
| Bme1390I | CCNGG | 1 cut(s) | 1253 |
| Bme18I | GGWCC | 1 cut(s) | 1249 |
| BmgT120I | GGNCC | 2 cut(s) | 231, 1249 |
| BmrFI | CCNGG | 1 cut(s) | 1253 |
| BmrI | ACTGGG | 1 cut(s) | 1295 |
| BmsI | GCATC | 5 cut(s) | 427, 748, 1164, 1348, 1482 |
| BmuI | ACTGGG | 1 cut(s) | 1295 |
| BpiI | GAAGAC | 2 cut(s) | 69, 1446 |
| BpmI | CTGGAG | 1 cut(s) | 452 |
| BsaAI | YACGTR | 2 cut(s) | 1032, 1391 |
| BsaJI | CCNNGG | 2 cut(s) | 1252, 1566 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 624, 654 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 252, 384, 430, 629 |
| Bse1I | ACTGG | 3 cut(s) | 81, 1290, 1526 |
| BseBI | CCWGG | 1 cut(s) | 1253 |
| BseDI | CCNNGG | 2 cut(s) | 1252, 1566 |
| BseGI | GGATG | 1 cut(s) | 911 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 252, 384, 430, 629 |
| BseMII | CTCAG | 4 cut(s) | 202, 225, 462, 1252 |
| BseNI | ACTGG | 3 cut(s) | 81, 1290, 1526 |
| BseXI | GCAGC | 2 cut(s) | 33, 1558 |
| BseYI | CCCAGC | 1 cut(s) | 383 |
| BshFI | GGCC | 2 cut(s) | 162, 232 |
| BsiHKAI | GWGCWC | 2 cut(s) | 274, 921 |
| BslFI | GGGAC | 1 cut(s) | 806 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 252, 384, 430, 629 |
| BsmFI | GGGAC | 1 cut(s) | 806 |
| BsmI | GAATGC | 2 cut(s) | 1091, 1428 |
| BsnI | GGCC | 2 cut(s) | 162, 232 |
| Bsp1286I | GDGCHC | 2 cut(s) | 274, 921 |
| Bsp143I | GATC | 7 cut(s) | 120, 369, 394, 1116, 1215, 1263, 1562 |
| BspACI | CCGC | 1 cut(s) | 1177 |
| BspANI | GGCC | 2 cut(s) | 162, 232 |
| BspCNI | CTCAG | 4 cut(s) | 201, 224, 461, 1251 |
| BspPI | GGATC | 3 cut(s) | 1210, 1258, 1557 |
| BsrI | ACTGG | 3 cut(s) | 81, 1290, 1526 |
| BssECI | CCNNGG | 2 cut(s) | 1252, 1566 |
| BssMI | GATC | 7 cut(s) | 120, 369, 394, 1116, 1215, 1263, 1562 |
| Bst2UI | CCWGG | 1 cut(s) | 1253 |
| Bst4CI | ACNGT | 5 cut(s) | 425, 581, 814, 1271, 1445 |
| Bst6I | CTCTTC | 1 cut(s) | 88 |
| BstBAI | YACGTR | 2 cut(s) | 1032, 1391 |
| BstC8I | GCNNGC | 4 cut(s) | 514, 624, 696, 1426 |
| BstDEI | CTNAG | 5 cut(s) | 35, 188, 211, 448, 1238 |
| BstDSI | CCRYGG | 1 cut(s) | 1566 |
| BstF5I | GGATG | 1 cut(s) | 911 |
| BstKTI | GATC | 7 cut(s) | 123, 372, 397, 1119, 1218, 1266, 1565 |
| BstMBI | GATC | 7 cut(s) | 120, 369, 394, 1116, 1215, 1263, 1562 |
| BstNI | CCWGG | 1 cut(s) | 1253 |
| BstNSI | RCATGY | 3 cut(s) | 698, 1247, 1428 |
| BstSCI | CCNGG | 1 cut(s) | 1251 |
| BstSFI | CTRYAG | 1 cut(s) | 1444 |
| BstSNI | TACGTA | 1 cut(s) | 1032 |
| BstV1I | GCAGC | 2 cut(s) | 33, 1558 |
| BstV2I | GAAGAC | 2 cut(s) | 69, 1446 |
| BstX2I | RGATCY | 1 cut(s) | 1562 |
| BstYI | RGATCY | 1 cut(s) | 1562 |
| BsuRI | GGCC | 2 cut(s) | 162, 232 |
| BtgI | CCRYGG | 1 cut(s) | 1566 |
| BtsCI | GGATG | 1 cut(s) | 911 |
| BtsIMutI | CAGTG | 5 cut(s) | 116, 372, 810, 1267, 1533 |
| Cac8I | GCNNGC | 4 cut(s) | 514, 624, 696, 1426 |
| Cfr13I | GGNCC | 2 cut(s) | 231, 1249 |
| Csp6I | GTAC | 6 cut(s) | 101, 352, 577, 733, 826, 1019 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 209, 244 |
| CviQI | GTAC | 6 cut(s) | 101, 352, 577, 733, 826, 1019 |
| DdeI | CTNAG | 5 cut(s) | 35, 188, 211, 448, 1238 |
| DpnI | GATC | 7 cut(s) | 122, 371, 396, 1118, 1217, 1265, 1564 |
| DpnII | GATC | 7 cut(s) | 120, 369, 394, 1116, 1215, 1263, 1562 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1219 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1219 |
| EaeI | YGGCCR | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 1 cut(s) | 88 |
| EarI | CTCTTC | 1 cut(s) | 88 |
| Eco105I | TACGTA | 1 cut(s) | 1032 |
| Eco47I | GGWCC | 1 cut(s) | 1249 |
| Eco57I | CTGAAG | 1 cut(s) | 348 |
| Eco72I | CACGTG | 1 cut(s) | 1391 |
| EcoRI | GAATTC | 2 cut(s) | 884, 1108 |
| EcoRII | CCWGG | 1 cut(s) | 1251 |
| EcoT22I | ATGCAT | 3 cut(s) | 327, 472, 1430 |
| FaqI | GGGAC | 1 cut(s) | 806 |
| FbaI | TGATCA | 3 cut(s) | 120, 369, 1116 |
| Fnu4HI | GCNGC | 2 cut(s) | 22, 1572 |
| FokI | GGATG | 1 cut(s) | 898 |
| Fsp4HI | GCNGC | 2 cut(s) | 22, 1572 |
| FspBI | CTAG | 2 cut(s) | 90, 489 |
| GluI | GCNGC | 2 cut(s) | 22, 1572 |
| GsaI | CCCAGC | 1 cut(s) | 387 |
| GsuI | CTGGAG | 1 cut(s) | 452 |
| HaeIII | GGCC | 2 cut(s) | 162, 232 |
| HincII | GTYRAC | 1 cut(s) | 1312 |
| HindII | GTYRAC | 1 cut(s) | 1312 |
| HinfI | GANTC | 5 cut(s) | 492, 794, 1094, 1196, 1295 |
| HphI | GGTGA | 2 cut(s) | 413, 509 |
| Hpy166II | GTNNAC | 6 cut(s) | 103, 354, 500, 932, 1249, 1312 |
| Hpy188I | TCNGA | 7 cut(s) | 191, 269, 451, 567, 1241, 1300, 1460 |
| Hpy188III | TCNNGA | 3 cut(s) | 305, 398, 431 |
| Hpy8I | GTNNAC | 6 cut(s) | 103, 354, 500, 932, 1249, 1312 |
| HpyAV | CCTTC | 4 cut(s) | 372, 430, 842, 1145 |
| HpyCH4III | ACNGT | 5 cut(s) | 425, 581, 814, 1271, 1445 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 1031, 1390 |
| HpyF3I | CTNAG | 5 cut(s) | 35, 188, 211, 448, 1238 |
| HpySE526I | ACGT | 3 cut(s) | 15, 1031, 1390 |
| Ksp22I | TGATCA | 3 cut(s) | 120, 369, 1116 |
| Kzo9I | GATC | 7 cut(s) | 120, 369, 394, 1116, 1215, 1263, 1562 |
| LmnI | GCTCC | 1 cut(s) | 924 |
| Lsp1109I | GCAGC | 2 cut(s) | 33, 1558 |
| LweI | GCATC | 5 cut(s) | 427, 748, 1164, 1348, 1482 |
| MaeI | CTAG | 2 cut(s) | 90, 489 |
| MaeII | ACGT | 3 cut(s) | 15, 1031, 1390 |
| MaeIII | GTNAC | 3 cut(s) | 1124, 1181, 1210 |
| MalI | GATC | 7 cut(s) | 122, 371, 396, 1118, 1217, 1265, 1564 |
| MboI | GATC | 7 cut(s) | 120, 369, 394, 1116, 1215, 1263, 1562 |
| MboII | GAAGA | 4 cut(s) | 69, 105, 195, 1451 |
| MflI | RGATCY | 1 cut(s) | 1562 |
| MhlI | GDGCHC | 2 cut(s) | 274, 921 |
| MlsI | TGGCCA | 1 cut(s) | 162 |
| MluCI | AATT | 7 cut(s) | 740, 765, 859, 884, 995, 1108, 1416 |
| MluNI | TGGCCA | 1 cut(s) | 162 |
| MlyI | GAGTC | 1 cut(s) | 788 |
| MmeI | TCCRAC | 1 cut(s) | 785 |
| MnlI | CCTC | 5 cut(s) | 218, 592, 626, 646, 1477 |
| Mox20I | TGGCCA | 1 cut(s) | 162 |
| Mph1103I | ATGCAT | 3 cut(s) | 327, 472, 1430 |
| MroXI | GAANNNNTTC | 1 cut(s) | 440 |
| MscI | TGGCCA | 1 cut(s) | 162 |
| MseI | TTAA | 4 cut(s) | 648, 1134, 1157, 1167 |
| MslI | CAYNNNNRTG | 3 cut(s) | 315, 699, 914 |
| Msp20I | TGGCCA | 1 cut(s) | 162 |
| MspR9I | CCNGG | 1 cut(s) | 1253 |
| Mva1269I | GAATGC | 2 cut(s) | 1091, 1428 |
| MvaI | CCWGG | 1 cut(s) | 1253 |
| NdeII | GATC | 7 cut(s) | 120, 369, 394, 1116, 1215, 1263, 1562 |
| NmuCI | GTSAC | 1 cut(s) | 1210 |
| NsiI | ATGCAT | 3 cut(s) | 327, 472, 1430 |
| NspI | RCATGY | 3 cut(s) | 698, 1247, 1428 |
| OliI | CACNNNNGTG | 1 cut(s) | 914 |
| PaeI | GCATGC | 2 cut(s) | 698, 1428 |
| PciI | ACATGT | 1 cut(s) | 1243 |
| PctI | GAATGC | 2 cut(s) | 1091, 1428 |
| PdmI | GAANNNNTTC | 1 cut(s) | 440 |
| PfeI | GAWTC | 4 cut(s) | 492, 1094, 1196, 1295 |
| PkrI | GCNGC | 2 cut(s) | 23, 1573 |
| PleI | GAGTC | 1 cut(s) | 788 |
| PmaCI | CACGTG | 1 cut(s) | 1391 |
| PmlI | CACGTG | 1 cut(s) | 1391 |
| PpsI | GAGTC | 1 cut(s) | 788 |
| Ppu21I | YACGTR | 2 cut(s) | 1032, 1391 |
| PscI | ACATGT | 1 cut(s) | 1243 |
| Psp6I | CCWGG | 1 cut(s) | 1251 |
| PspCI | CACGTG | 1 cut(s) | 1391 |
| PspFI | CCCAGC | 1 cut(s) | 383 |
| PspGI | CCWGG | 1 cut(s) | 1251 |
| PspPI | GGNCC | 2 cut(s) | 231, 1249 |
| PsuI | RGATCY | 1 cut(s) | 1562 |
| RsaI | GTAC | 6 cut(s) | 102, 353, 578, 734, 827, 1020 |
| RsaNI | GTAC | 6 cut(s) | 101, 352, 577, 733, 826, 1019 |
| RseI | CAYNNNNRTG | 3 cut(s) | 315, 699, 914 |
| SaqAI | TTAA | 4 cut(s) | 648, 1134, 1157, 1167 |
| SatI | GCNGC | 2 cut(s) | 22, 1572 |
| Sau3AI | GATC | 7 cut(s) | 120, 369, 394, 1116, 1215, 1263, 1562 |
| Sau96I | GGNCC | 2 cut(s) | 231, 1249 |
| SchI | GAGTC | 1 cut(s) | 788 |
| ScrFI | CCNGG | 1 cut(s) | 1253 |
| SduI | GDGCHC | 2 cut(s) | 274, 921 |
| SfaNI | GCATC | 5 cut(s) | 427, 748, 1164, 1348, 1482 |
| SfcI | CTRYAG | 1 cut(s) | 1444 |
| SinI | GGWCC | 1 cut(s) | 1249 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 315, 699, 914 |
| SnaBI | TACGTA | 1 cut(s) | 1032 |
| SphI | GCATGC | 2 cut(s) | 698, 1428 |
| Sse9I | AATT | 7 cut(s) | 740, 765, 859, 884, 995, 1108, 1416 |
| SsiI | CCGC | 1 cut(s) | 1177 |
| SspMI | CTAG | 2 cut(s) | 90, 489 |
| StyD4I | CCNGG | 1 cut(s) | 1251 |
| TaaI | ACNGT | 5 cut(s) | 425, 581, 814, 1271, 1445 |
| TaiI | ACGT | 3 cut(s) | 18, 1034, 1393 |
| TaqI | TCGA | 2 cut(s) | 525, 1326 |
| TasI | AATT | 7 cut(s) | 740, 765, 859, 884, 995, 1108, 1416 |
| TatI | WGTACW | 3 cut(s) | 100, 732, 1018 |
| TfiI | GAWTC | 4 cut(s) | 492, 1094, 1196, 1295 |
| Tru1I | TTAA | 4 cut(s) | 648, 1134, 1157, 1167 |
| Tru9I | TTAA | 4 cut(s) | 648, 1134, 1157, 1167 |
| TscAI | CASTG | 5 cut(s) | 123, 372, 817, 1274, 1533 |
| TseFI | GTSAC | 1 cut(s) | 1210 |
| TseI | GCWGC | 2 cut(s) | 21, 1571 |
| Tsp45I | GTSAC | 1 cut(s) | 1210 |
| TspDTI | ATGAA | 9 cut(s) | 333, 347, 543, 656, 956, 992, 1164, 1421, 1452 |
| TspGWI | ACGGA | 2 cut(s) | 904, 911 |
| TspRI | CASTG | 5 cut(s) | 123, 372, 817, 1274, 1533 |
| VpaK11BI | GGWCC | 1 cut(s) | 1249 |
| XapI | RAATTY | 5 cut(s) | 740, 765, 884, 995, 1108 |
| XceI | RCATGY | 3 cut(s) | 698, 1247, 1428 |
| XmnI | GAANNNNTTC | 1 cut(s) | 440 |
| XspI | CTAG | 2 cut(s) | 90, 489 |
| Zsp2I | ATGCAT | 3 cut(s) | 327, 472, 1430 |