Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015684

Physical Location & Seq

Genomic Coordinates Reverse (-)

36716426 .. 36718720

Gene Structure 2295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGTTGATCAAGTTATGCAGTCCAGAGAAAAAGAATCCAAAAAGTCGAAAGAAGAAAAATGACACAAACAGTATTATAAGTACATCAAATAAGAAATCAAGCAAAGAGAATCCCGATAAATATAGAAATAGCTCAAAACACTTTCAGACTCCGATCCTACCAATATACAGTGTAGCATCAAATCTTACTTTTCTTGGCGGGGATCGATTAATTGAGGTTAACTATCTCATATTCTTGCTCACCATGGCAATAAGTTCGATTACCATTTTTGGGGTGCTAGGCAACATTATGTCAGGATTACTCTACCTTTCTCCTACAAACGTGTTTGTGAGAATCGCAAAGCGTAGATCAACAGAGGAATTTGAGAGTATTCCTTATATTAGCAAACTGTTGAATGCTTACTTCTGGGTTTACTATGGATTTATTAAGCCTAACAGCGTGGTCGTCGCCACTGTCAATGTTTTCGGTGCTGCTGTCGAGATTGTTTTCCTTACCATATTTCTACTTTTTGCACCACCAAGAATGAAGGTTAGGACTGCGATACTAGTTATAGTTCTGGATGTTGCATTTCCCGGAGCAACAATTTTACTTACTCACTTTCTGCTAGACGGAGATAAAAGGATCGATGTTGCTGGACTCTGGTGTGTAATCTTCAGCATGATTGCATATGCTTCCCCTCTTTCAGCTATGAAAACTGTGGTGGCGTTAAAGAGTGTGGAGTACATGCCTTTCCTTCTCTCTTTCATCTTTTTTCTTAATGGAGGAGTTTGGACAGTGTATGCCATTCTTGCGAAAGACTTGTTTGTTGGAATTCCAAATGGAAGTGGATTTTTACTTGGAACTGCTCAGCTGATTCTCTATTTCATATACTGGAAACCGAAGTCATCAAGGCAAGCATCTGACGGTTTAGAGGATCAACAGATCATAAGCGAAGCACTCATTTCTAATCCTTCACAGGGTAAAAGTGAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005353 GO:0005355 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0006995 GO:0007034 GO:0007154 GO:0007623 GO:0008150 GO:0008515 GO:0008643 GO:0008645 GO:0009266 GO:0009267 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009705 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009987 GO:0009991 GO:0010033 GO:0015144 GO:0015145 GO:0015149 GO:0015154 GO:0015157 GO:0015749 GO:0015755 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0033231 GO:0033554 GO:0034219 GO:0034284 GO:0034285 GO:0034486 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0048511 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051716 GO:0055085 GO:0065003 GO:0070417 GO:0071496 GO:0071702 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1902334 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

324

Amino Acids

36.1

Weight (kDa)

9.55

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	89 - 172	4.3e-19	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	212 - 294	2e-21	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015684)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08940 FvH4_7g08940 FvH4_7g08940
prunus_persica	Prupe.2G118600_v2.0.a1 Prupe.2G118600_v2.0.a1
pyrus_communis	pycom07g07660
rosa_chinensis	RchiOBHm_Chr1g0344401
rosa_laevigata	RLG00000028900
rosa_multiflora	Rmu_sc0008332.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309760
rosa_rugosa	Rorug01G0173700 Rorug01G0173800
rosa_samantha	Rh1AG190000 Rh1BG156900 Rh1CG175500
rosa_wichuraiana	Rw1G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	4 cut(s)	148, 210, 629, 921
AcsI	RAATTY	2 cut(s)	359, 810
AcuI	CTGAAG	1 cut(s)	637
AfaI	GTAC	2 cut(s)	82, 722
AfiI	CCNNNNNNNGG	2 cut(s)	270, 956
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	1 cut(s)	394
AhlI	ACTAGT	1 cut(s)	544
AluBI	AGCT	3 cut(s)	132, 686, 850
AluI	AGCT	3 cut(s)	132, 686, 850
Alw21I	GWGCWC	1 cut(s)	972
AlwI	GGATC	4 cut(s)	148, 210, 629, 921
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	2 cut(s)	359, 810
AseI	ATTAAT	1 cut(s)	209
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	1 cut(s)	457
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BclI	TGATCA	1 cut(s)	6
BcnI	CCSGG	1 cut(s)	573
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	4 cut(s)	278, 545, 605, 973
BisI	GCNGC	1 cut(s)	471
BlpI	GCTNAGC	1 cut(s)	846
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	573
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	185, 905
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuMI	CCSGG	1 cut(s)	573
Bsa29I	ATCGAT	2 cut(s)	205, 624
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 956
Bse1I	ACTGG	1 cut(s)	875
BseCI	ATCGAT	2 cut(s)	205, 624
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	270, 956
BseMII	CTCAG	1 cut(s)	860
BseNI	ACTGG	1 cut(s)	875
BseRI	GAGGAG	1 cut(s)	777
BseXI	GCAGC	1 cut(s)	457
BshVI	ATCGAT	2 cut(s)	205, 624
BsiHKAI	GWGCWC	1 cut(s)	972
BsiSI	CCGG	1 cut(s)	573
BslI	CCNNNNNNNGG	2 cut(s)	270, 956
BsmI	GAATGC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	7 cut(s)	6, 153, 202, 347, 621, 913, 921
Bsp1720I	GCTNAGC	1 cut(s)	846
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	859
BspDI	ATCGAT	2 cut(s)	205, 624
BspPI	GGATC	4 cut(s)	148, 210, 629, 921
BsrI	ACTGG	1 cut(s)	875
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	7 cut(s)	6, 153, 202, 347, 621, 913, 921
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	7 cut(s)	71, 170, 390, 454, 697, 775, 905
BstC8I	GCNNGC	1 cut(s)	894
BstDEI	CTNAG	1 cut(s)	846
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	565
BstKTI	GATC	7 cut(s)	9, 156, 205, 350, 624, 916, 924
BstMBI	GATC	7 cut(s)	6, 153, 202, 347, 621, 913, 921
BstMWI	GCNNNNNNNGC	1 cut(s)	788
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	571
BstV1I	GCAGC	1 cut(s)	457
Bsu15I	ATCGAT	2 cut(s)	205, 624
BsuTUI	ATCGAT	2 cut(s)	205, 624
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	3 cut(s)	175, 450, 780
Cac8I	GCNNGC	1 cut(s)	894
ClaI	ATCGAT	2 cut(s)	205, 624
Csp6I	GTAC	2 cut(s)	81, 721
CviAII	CATG	3 cut(s)	244, 658, 724
CviJI	RGCY	4 cut(s)	132, 430, 686, 850
CviKI_1	RGCY	4 cut(s)	132, 430, 686, 850
CviQI	GTAC	2 cut(s)	81, 721
DdeI	CTNAG	1 cut(s)	846
DpnI	GATC	7 cut(s)	8, 155, 204, 349, 623, 915, 923
DpnII	GATC	7 cut(s)	6, 153, 202, 347, 621, 913, 921
Eco130I	CCWWGG	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	637
EcoRI	GAATTC	1 cut(s)	810
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	3 cut(s)	247, 661, 727
FatI	CATG	3 cut(s)	243, 657, 723
FauI	CCCGC	1 cut(s)	191
FauNDI	CATATG	1 cut(s)	667
FbaI	TGATCA	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	4 cut(s)	278, 545, 605, 973
GluI	GCNGC	1 cut(s)	471
HapII	CCGG	1 cut(s)	573
Hin1II	CATG	3 cut(s)	247, 661, 727
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	6 cut(s)	34, 109, 148, 333, 636, 853
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	220, 412
Hpy188I	TCNGA	3 cut(s)	147, 153, 901
Hpy188III	TCNNGA	5 cut(s)	23, 113, 294, 478, 557
Hpy8I	GTNNAC	2 cut(s)	220, 412
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	3 cut(s)	520, 743, 960
HpyCH4III	ACNGT	7 cut(s)	71, 170, 390, 454, 697, 775, 905
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	18, 512, 566, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	788
HpyF3I	CTNAG	1 cut(s)	846
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	247, 661, 727
Ksp22I	TGATCA	1 cut(s)	6
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	7 cut(s)	6, 153, 202, 347, 621, 913, 921
LmnI	GCTCC	1 cut(s)	575
LpnPI	CCDG	9 cut(s)	36, 279, 391, 542, 586, 618, 625, 856, 941
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	2 cut(s)	185, 905
MaeI	CTAG	4 cut(s)	278, 545, 605, 973
MaeII	ACGT	1 cut(s)	321
MalI	GATC	7 cut(s)	8, 155, 204, 349, 623, 915, 923
MboI	GATC	7 cut(s)	6, 153, 202, 347, 621, 913, 921
MboII	GAAGA	2 cut(s)	64, 643
MhlI	GDGCHC	1 cut(s)	972
MluCI	AATT	4 cut(s)	210, 359, 582, 810
MlyI	GAGTC	2 cut(s)	142, 630
MmeI	TCCRAC	1 cut(s)	787
MnlI	CCTC	5 cut(s)	208, 349, 687, 755, 904
MseI	TTAA	5 cut(s)	209, 219, 426, 707, 756
MspA1I	CMGCKG	1 cut(s)	850
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	788
NciI	CCSGG	1 cut(s)	573
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	7 cut(s)	6, 153, 202, 347, 621, 913, 921
NlaIII	CATG	3 cut(s)	247, 661, 727
NspI	RCATGY	1 cut(s)	727
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	4 cut(s)	34, 109, 333, 853
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	2 cut(s)	142, 630
PpsI	GAGTC	2 cut(s)	142, 630
PshBI	ATTAAT	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	850
RsaI	GTAC	2 cut(s)	82, 722
RsaNI	GTAC	2 cut(s)	81, 721
SaqAI	TTAA	5 cut(s)	209, 219, 426, 707, 756
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	7 cut(s)	6, 153, 202, 347, 621, 913, 921
SchI	GAGTC	2 cut(s)	142, 630
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	1 cut(s)	972
SetI	ASST	7 cut(s)	134, 219, 309, 324, 531, 688, 852
SfaNI	GCATC	2 cut(s)	185, 905
SpeI	ACTAGT	1 cut(s)	544
Sse9I	AATT	4 cut(s)	210, 359, 582, 810
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	4 cut(s)	278, 545, 605, 973
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	7 cut(s)	71, 170, 390, 454, 697, 775, 905
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	5 cut(s)	46, 205, 257, 477, 624
TasI	AATT	4 cut(s)	210, 359, 582, 810
TatI	WGTACW	2 cut(s)	80, 720
TfiI	GAWTC	4 cut(s)	34, 109, 333, 853
Tru1I	TTAA	5 cut(s)	209, 219, 426, 707, 756
Tru9I	TTAA	5 cut(s)	209, 219, 426, 707, 756
TscAI	CASTG	3 cut(s)	175, 457, 780
TseI	GCWGC	1 cut(s)	470
TspDTI	ATGAA	4 cut(s)	539, 704, 733, 853
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	3 cut(s)	175, 457, 780
VspI	ATTAAT	1 cut(s)	209
XapI	RAATTY	2 cut(s)	359, 810
XceI	RCATGY	1 cut(s)	727
XspI	CTAG	4 cut(s)	278, 545, 605, 973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.