Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010188

Physical Location & Seq

Genomic Coordinates Reverse (-)

40109767 .. 40110374

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAAAAATAATTTTTTTTACGGATATTCGAAACAAGCTGACCTGCCTGAAAAAAAGAGGCTGCTATTCACCGAGTTTATGAAAAATAATGTGAAAATTAACCAGGCTGATTCCGCTACCTTGTTGACAGGAGTACTAGCGCCTCCAGCAGCCATGGCTGCTAAAAAAGCTGGGGAGAGTCTTCCCCAGCTGAAAATGATCAAGAACGTCCCAGACGTCCTTTTCGTGCCGTCAGCAACAGTAGTAGCACTCATTACCGTAAGGTTCTCCAAAAGACTTTTCATGCGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.83

Weight (kDa)

10.2

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37445 AT4G37445
fragaria_vesca	FvH4_7g09940 FvH4_7g09940 FvH4_7g09940
malus_domestica	MD07G1104600.v1.1 MD07G1105300.v1.1
prunus_persica	Prupe.2G128200_v2.0.a1 Prupe.2G128200_v2.0.a1
pyrus_communis	pycom07g09050
rosa_chinensis	RchiOBHm_Chr1g0347501 RchiOBHm_Chr1g0347531
rosa_multiflora	Rmu_ssc0000280.1_g000004
rosa_roxburghii	Rroxscaffold_4G00307750
rosa_rugosa	Rorug01G0187400
rosa_samantha	Rh1AG204600 Rh1BG170400 Rh1CG189700 Rh1DG200700
rosa_wichuraiana	Rw0G013620 Rw1G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	51
AciI	CCGC	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	1 cut(s)	263
AluBI	AGCT	3 cut(s)	38, 170, 190
AluI	AGCT	3 cut(s)	38, 170, 190
ApeKI	GCWGC	3 cut(s)	61, 149, 158
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AspLEI	GCGC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	48, 145, 161
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	104
BclI	TGATCA	1 cut(s)	198
BfaI	CTAG	2 cut(s)	137, 292
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	51
BisI	GCNGC	3 cut(s)	62, 150, 159
BlsI	GCNGC	3 cut(s)	63, 151, 160
BmcAI	AGTACT	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	129
Bpu14I	TTCGAA	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	48, 145, 161
BseYI	CCCAGC	2 cut(s)	170, 186
BslFI	GGGAC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	241, 259
BstACI	GRCGYC	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	29
BstDSI	CCRYGG	1 cut(s)	153
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 146, 155, 158, 167
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstV1I	GCAGC	3 cut(s)	48, 145, 161
BstV2I	GAAGAC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	153
BveI	ACCTGC	1 cut(s)	51
CfoI	GCGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	2 cut(s)	154, 283
CviJI	RGCY	7 cut(s)	38, 61, 107, 152, 158, 170, 190
CviKI_1	RGCY	7 cut(s)	38, 61, 107, 152, 158, 170, 190
CviQI	GTAC	1 cut(s)	134
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	157, 286
FaiI	YATR	3 cut(s)	80, 155, 284
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	153, 282
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	62, 150, 159
Fsp4HI	GCNGC	3 cut(s)	62, 150, 159
FspBI	CTAG	2 cut(s)	137, 292
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	3 cut(s)	62, 150, 159
GsaI	CCCAGC	2 cut(s)	174, 190
GsuI	CTGGAG	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	143
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	157, 286
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	110, 178
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	241, 259
HpyCH4IV	ACGT	2 cut(s)	207, 216
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 146, 155, 158, 167
HpySE526I	ACGT	2 cut(s)	207, 216
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	157, 286
HspAI	GCGC	1 cut(s)	140
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	198
LpnPI	CCDG	9 cut(s)	56, 60, 89, 114, 116, 156, 159, 200, 225
Lsp1109I	GCAGC	3 cut(s)	48, 145, 161
MaeI	CTAG	2 cut(s)	137, 292
MaeII	ACGT	2 cut(s)	207, 216
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MboII	GAAGA	1 cut(s)	173
MluCI	AATT	2 cut(s)	10, 96
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	2 cut(s)	51, 153
MseI	TTAA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	5 cut(s)	113, 146, 155, 158, 167
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	198
NlaIII	CATG	2 cut(s)	157, 286
NspV	TTCGAA	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 222
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	63, 151, 160
PleI	GAGTC	1 cut(s)	186
PpsI	GAGTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	2 cut(s)	170, 186
PspGI	CCWGG	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	3 cut(s)	62, 150, 159
Sau3AI	GATC	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	135
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	8 cut(s)	40, 45, 122, 172, 192, 210, 219, 266
SfuI	TTCGAA	1 cut(s)	29
Sse9I	AATT	2 cut(s)	10, 96
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	137, 292
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	241, 259
TaiI	ACGT	2 cut(s)	210, 219
TaqI	TCGA	1 cut(s)	29
TasI	AATT	2 cut(s)	10, 96
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	3 cut(s)	61, 149, 158
TspDTI	ATGAA	3 cut(s)	17, 95, 271
TspGWI	ACGGA	1 cut(s)	36
XspI	CTAG	2 cut(s)	137, 292
ZraI	GACGTC	1 cut(s)	217
ZrmI	AGTACT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.