RchiOBHm_Chr1g0348581

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008806
Physical Location & Seq
Forward (+)
41482204 .. 41485010
2807 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 984 bp
ATGCTGGACTACGAATGGGCCAACCCTTCCTCGGTCATGCTGGATGAATCCGAATCCGTCAACGGATCCGACCCTAACCGACACCTTCACCACCACAACAGCATTCTGGACCACTACTCCAGCACTCAGGCGGCCTTCAACAACCTTCTCCCTCCACAGCCTCACCAGCAGCAGCAGCAGTCGGCCGGCAGCGCATTCGCCCACCATTTCAACCAGGCCCAGGCCCAGGCCCACCAGGTGCACTCCCTCTTCGACCCCAGCGTCTTCGCCAGCGCGTCGTCCTACGCGCCGACGTCGGCTCACCACCACCCCCACCACTCCGTGCTGACCCTCGACCCGTCCATCCCGGGCCACCACGGGCTCGTGTTGATCCCCAAGAGCGAGGATGTCTGTCCGCCCGCCGACTTTGCCACGAGGATCGGACTTAACCTCGGCGGGCGGACCTACTTCTCGTCCGAGGACGACTTCATGAACCGGCTCTACCGCCGGTCCAGGCCAGCCGACCACGGCCCGATCAACTCCCCAAGATGCCAGGCCGAGGGCTGCCACGCCGATCTCTCCCAGGCCAAGCACTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCCACCGTCATCGCCAACGGGTTGACTCAGCGATTCTGTCAGCAGTGCAGCAGATTCCATCTTCTTGCGGAGTTTGACAACGGAAAACGCAGTTGCCGGAAGAGATTGGCCGATCACAACCGTCGCCGGCGAAAAACTCAGCAACCAAATCAAGAAAACCGCAGCTCTCAACAGCGGCAGGAAGGTACCCGGAATTCATCATCAGACAATGTTACAAAGTCTCCGGCGGAATCAGCAGGTCATTCGTCTTCGGCTGTGACTGTGGCCCTGTCGCCGCCGCGAATGGGGTTGGATTGTTTTAGGCCAAGGCAATATCAAAACACAACTTCTTCAGGGTCATCAAGCTCACTTTTTTTCTCAAGTGGGTGA

Protein Analysis

327

Amino Acids

36.43

Weight (kDa)

8.95

Isoelectric Point (pI)

61.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 177 - 250 1.4e-31 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 842
Acc65I GGTACC 1 cut(s) 800
AccB1I GGYRCC 1 cut(s) 800
AccII CGCG 3 cut(s) 275, 287, 895
AclWI GGATC 4 cut(s) 60, 73, 364, 425
AcoI YGGCCR 2 cut(s) 183, 723
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 1 cut(s) 930
AcyI GRCGYC 1 cut(s) 293
AdeI CACNNNGTG 2 cut(s) 238, 322
AfaI GTAC 1 cut(s) 802
AfiI CCNNNNNNNGG 6 cut(s) 31, 220, 226, 538, 589, 899
AgsI TTSAA 2 cut(s) 139, 211
AjnI CCWGG 7 cut(s) 213, 219, 225, 234, 491, 531, 561
AluBI AGCT 2 cut(s) 780, 960
AluI AGCT 2 cut(s) 780, 960
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 1 cut(s) 840
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 4 cut(s) 60, 73, 364, 425
Ama87I CYCGRG 1 cut(s) 346
ApaLI GTGCAC 1 cut(s) 239
ApeKI GCWGC 7 cut(s) 169, 172, 175, 189, 543, 663, 777
ApoI RAATTY 1 cut(s) 808
Asp718I GGTACC 1 cut(s) 800
AspLEI GCGC 3 cut(s) 194, 275, 289
AsuC2I CCSGG 3 cut(s) 347, 348, 805
AsuHPI GGTGA 3 cut(s) 80, 155, 293
AvaI CYCGRG 1 cut(s) 346
AvaII GGWCC 3 cut(s) 109, 441, 489
BaeGI GKGCMC 1 cut(s) 243
BamHI GGATCC 1 cut(s) 65
BanI GGYRCC 1 cut(s) 800
BanII GRGCYC 1 cut(s) 363
BauI CACGAG 2 cut(s) 362, 412
BbsI GAAGAC 2 cut(s) 256, 855
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 7 cut(s) 181, 184, 187, 201, 530, 675, 789
BccI CCATC 2 cut(s) 350, 681
BceAI ACGGC 1 cut(s) 523
BcgI CGANNNNNNTGC 4 cut(s) 178, 212, 840, 874
BciT130I CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
BcnI CCSGG 3 cut(s) 347, 348, 805
BcoDI GTCTC 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 842
Bme18I GGWCC 3 cut(s) 109, 441, 489
BmeT110I CYCGRG 1 cut(s) 346
BmiI GGNNCC 2 cut(s) 67, 802
BmsI GCATC 1 cut(s) 518
BpiI GAAGAC 2 cut(s) 256, 855
BplI GAGNNNNNCTC 2 cut(s) 590, 622
BpmI CTGGAG 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 958
BpuMI CCSGG 3 cut(s) 347, 348, 805
BsaHI GRCGYC 1 cut(s) 293
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 820, 850
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 220, 226, 538, 589, 899
Bse118I RCCGGY 4 cut(s) 185, 474, 486, 741
BseBI CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
BseGI GGATG 3 cut(s) 49, 342, 391
BseLI CCNNNNNNNGG 6 cut(s) 31, 220, 226, 538, 589, 899
BseMII CTCAG 3 cut(s) 140, 656, 767
BseSI GKGCMC 1 cut(s) 243
BseX3I CGGCCG 1 cut(s) 183
BseXI GCAGC 7 cut(s) 181, 184, 187, 201, 530, 675, 789
BseYI CCCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 682
Bsh1236I CGCG 3 cut(s) 275, 287, 895
Bsh1285I CGRYCG 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 800
BsiEI CGRYCG 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 8 cut(s) 186, 347, 475, 487, 712, 742, 805, 839
BslI CCNNNNNNNGG 6 cut(s) 31, 220, 226, 538, 589, 899
BsmAI GTCTC 1 cut(s) 840
BsmI GAATGC 2 cut(s) 102, 194
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 2 cut(s) 243, 363
Bsp143I GATC 6 cut(s) 65, 369, 417, 513, 553, 727
BspCNI CTCAG 3 cut(s) 139, 655, 766
BspFNI CGCG 3 cut(s) 275, 287, 895
BspHI TCATGA 1 cut(s) 468
BspLI GGNNCC 2 cut(s) 67, 802
BspMI ACCTGC 1 cut(s) 842
BspPI GGATC 4 cut(s) 60, 73, 364, 425
BspT107I GGYRCC 1 cut(s) 800
BsrFI RCCGGY 4 cut(s) 185, 474, 486, 741
BssAI RCCGGY 4 cut(s) 185, 474, 486, 741
BssMI GATC 6 cut(s) 65, 369, 417, 513, 553, 727
BssNI GRCGYC 1 cut(s) 293
BssSI CACGAG 2 cut(s) 362, 412
BssT1I CCWWGG 1 cut(s) 920
Bst2BI CACGAG 2 cut(s) 362, 412
Bst2UI CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
Bst4CI ACNGT 3 cut(s) 622, 737, 877
Bst6I CTCTTC 2 cut(s) 254, 710
BstACI GRCGYC 1 cut(s) 293
BstC8I GCNNGC 6 cut(s) 187, 271, 399, 437, 498, 743
BstDEI CTNAG 3 cut(s) 126, 642, 753
BstDSI CCRYGG 2 cut(s) 355, 505
BstF5I GGATG 3 cut(s) 49, 342, 391
BstFNI CGCG 3 cut(s) 275, 287, 895
BstHHI GCGC 3 cut(s) 194, 275, 289
BstKTI GATC 6 cut(s) 68, 372, 420, 516, 556, 730
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 6 cut(s) 65, 369, 417, 513, 553, 727
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 5 cut(s) 166, 175, 191, 407, 848
BstNI CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 3 cut(s) 275, 287, 895
BstV1I GCAGC 7 cut(s) 181, 184, 187, 201, 530, 675, 789
BstV2I GAAGAC 2 cut(s) 256, 855
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BstZI CGGCCG 1 cut(s) 183
BtgI CCRYGG 2 cut(s) 355, 505
BtgZI GCGATG 1 cut(s) 610
BtsCI GGATG 3 cut(s) 49, 342, 391
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 665
BveI ACCTGC 1 cut(s) 842
Cac8I GCNNGC 6 cut(s) 187, 271, 399, 437, 498, 743
CciI TCATGA 1 cut(s) 468
CfoI GCGC 3 cut(s) 194, 275, 289
Cfr10I RCCGGY 4 cut(s) 185, 474, 486, 741
Cfr9I CCCGGG 1 cut(s) 346
CseI GACGC 2 cut(s) 250, 264
CsiI ACCWGGT 1 cut(s) 234
Csp6I GTAC 1 cut(s) 801
CviAII CATG 2 cut(s) 37, 469
CviQI GTAC 1 cut(s) 801
DdeI CTNAG 3 cut(s) 126, 642, 753
DpnI GATC 6 cut(s) 67, 371, 419, 515, 555, 729
DpnII GATC 6 cut(s) 65, 369, 417, 513, 553, 727
DraIII CACNNNGTG 2 cut(s) 238, 322
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
EaeI YGGCCR 2 cut(s) 183, 723
EagI CGGCCG 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 254, 710
EarI CTCTTC 2 cut(s) 254, 710
EciI GGCGGA 3 cut(s) 384, 454, 857
EclXI CGGCCG 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 920
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 3 cut(s) 109, 441, 489
Eco52I CGGCCG 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 930
Eco88I CYCGRG 1 cut(s) 346
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 7 cut(s) 213, 219, 225, 234, 491, 531, 561
EcoT14I CCWWGG 1 cut(s) 920
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 920
FaeI CATG 2 cut(s) 40, 472
FaiI YATR 2 cut(s) 38, 470
FatI CATG 2 cut(s) 36, 468
FauI CCCGC 2 cut(s) 406, 428
FokI GGATG 3 cut(s) 56, 329, 398
FriOI GRGCYC 1 cut(s) 363
GlaI GCGC 3 cut(s) 193, 274, 288
GsaI CCCAGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 103
HapII CCGG 8 cut(s) 186, 347, 475, 487, 712, 742, 805, 839
HgaI GACGC 2 cut(s) 250, 264
HhaI GCGC 3 cut(s) 194, 275, 289
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 2 cut(s) 40, 472
Hin6I GCGC 3 cut(s) 192, 273, 287
HinP1I GCGC 3 cut(s) 192, 273, 287
HincII GTYRAC 2 cut(s) 61, 639
HindII GTYRAC 2 cut(s) 61, 639
HinfI GANTC 6 cut(s) 47, 53, 640, 648, 669, 845
HpaII CCGG 8 cut(s) 186, 347, 475, 487, 712, 742, 805, 839
HphI GGTGA 3 cut(s) 80, 155, 293
Hpy166II GTNNAC 3 cut(s) 61, 241, 639
Hpy188I TCNGA 5 cut(s) 52, 70, 422, 457, 820
Hpy188III TCNNGA 3 cut(s) 107, 469, 767
Hpy8I GTNNAC 3 cut(s) 61, 241, 639
Hpy99I CGWCG 4 cut(s) 280, 295, 298, 741
HpyAV CCTTC 5 cut(s) 36, 95, 145, 155, 791
HpyCH4III ACNGT 3 cut(s) 622, 737, 877
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 241, 663
HpyF10VI GCNNNNNNNGC 5 cut(s) 166, 175, 191, 407, 848
HpyF3I CTNAG 3 cut(s) 126, 642, 753
HpySE526I ACGT 1 cut(s) 293
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 2 cut(s) 40, 472
HspAI GCGC 3 cut(s) 192, 273, 287
KpnI GGTACC 1 cut(s) 804
KroI GCCGGC 2 cut(s) 185, 741
KroNI GCCGGC 2 cut(s) 187, 743
Kzo9I GATC 6 cut(s) 65, 369, 417, 513, 553, 727
Lsp1109I GCAGC 7 cut(s) 181, 184, 187, 201, 530, 675, 789
LweI GCATC 1 cut(s) 518
MabI ACCWGGT 1 cut(s) 234
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 826, 871
MalI GATC 6 cut(s) 67, 371, 419, 515, 555, 729
MboI GATC 6 cut(s) 65, 369, 417, 513, 553, 727
MboII GAAGA 6 cut(s) 241, 256, 668, 727, 855, 936
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 2 cut(s) 243, 363
MluCI AATT 1 cut(s) 808
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 2 cut(s) 93, 885
MreI CGCCGGCG 1 cut(s) 741
MroNI GCCGGC 2 cut(s) 185, 741
MseI TTAA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 8 cut(s) 186, 347, 475, 487, 712, 742, 805, 839
Mva1269I GAATGC 2 cut(s) 102, 194
MvaI CCWGG 7 cut(s) 215, 221, 227, 236, 493, 533, 563
MvnI CGCG 3 cut(s) 275, 287, 895
MwoI GCNNNNNNNGC 5 cut(s) 166, 175, 191, 407, 848
NaeI GCCGGC 2 cut(s) 187, 743
NciI CCSGG 3 cut(s) 347, 348, 805
NdeII GATC 6 cut(s) 65, 369, 417, 513, 553, 727
NgoMIV GCCGGC 2 cut(s) 185, 741
NlaIII CATG 2 cut(s) 40, 472
NlaIV GGNNCC 2 cut(s) 67, 802
NmeAIII GCCGAG 2 cut(s) 411, 562
NmuCI GTSAC 1 cut(s) 871
PagI TCATGA 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 2 cut(s) 102, 194
PdiI GCCGGC 2 cut(s) 187, 743
PfeI GAWTC 5 cut(s) 47, 53, 648, 669, 845
PleI GAGTC 1 cut(s) 634
PpsI GAGTC 1 cut(s) 634
Psp6I CCWGG 7 cut(s) 213, 219, 225, 234, 491, 531, 561
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 7 cut(s) 213, 219, 225, 234, 491, 531, 561
PspN4I GGNNCC 2 cut(s) 67, 802
PsrI GAACNNNNNNTAC 2 cut(s) 464, 496
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 1 cut(s) 802
RsaNI GTAC 1 cut(s) 801
SaqAI TTAA 1 cut(s) 426
Sau3AI GATC 6 cut(s) 65, 369, 417, 513, 553, 727
SchI GAGTC 1 cut(s) 634
SduI GDGCHC 2 cut(s) 243, 363
SexAI ACCWGGT 1 cut(s) 234
SfaNI GCATC 1 cut(s) 518
SgrAI CRCCGGYG 1 cut(s) 741
SinI GGWCC 3 cut(s) 109, 441, 489
SmaI CCCGGG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 973
SmoI CTYRAG 1 cut(s) 973
Sse9I AATT 1 cut(s) 808
StyI CCWWGG 1 cut(s) 920
TaaI ACNGT 3 cut(s) 622, 737, 877
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 252, 333
TaqII GACCGA 1 cut(s) 22
TasI AATT 1 cut(s) 808
TauI GCSGC 5 cut(s) 134, 585, 793, 892, 895
TfiI GAWTC 5 cut(s) 47, 53, 648, 669, 845
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 665
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 7 cut(s) 169, 172, 175, 189, 543, 663, 777
Tsp45I GTSAC 1 cut(s) 871
TspDTI ATGAA 4 cut(s) 60, 457, 485, 801
TspGWI ACGGA 4 cut(s) 46, 78, 310, 711
TspMI CCCGGG 1 cut(s) 346
TspRI CASTG 1 cut(s) 665
VneI GTGCAC 1 cut(s) 239
VpaK11BI GGWCC 3 cut(s) 109, 441, 489
XapI RAATTY 1 cut(s) 808
XmaI CCCGGG 1 cut(s) 346
ZraI GACGTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.