Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0350211 RchiOBHm_Chr4g0418181 |
| rosa_laevigata | RLG00000013738 RLG00000019318 |
| rosa_multiflora | Rmu_co8427249.1_g000001 Rmu_sc0000708.1_g000007 |
| rosa_rugosa | Rorug02G0234700 Rorug02G0439900 Rorug02G0586800 Rorug07G0328500 |
| rosa_samantha | Rh2DG276000 Rh3CG157200 Rh3DG074400 Rh5DG339100 Rh6CG133900 Rh7DG247500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 78 |
| AcuI | CTGAAG | 1 cut(s) | 135 |
| AdeI | CACNNNGTG | 1 cut(s) | 159 |
| AgsI | TTSAA | 2 cut(s) | 10, 203 |
| AluBI | AGCT | 1 cut(s) | 23 |
| AluI | AGCT | 1 cut(s) | 23 |
| ApeKI | GCWGC | 1 cut(s) | 23 |
| ApoI | RAATTY | 1 cut(s) | 78 |
| BbsI | GAAGAC | 1 cut(s) | 123 |
| BbvI | GCAGC | 1 cut(s) | 10 |
| BccI | CCATC | 1 cut(s) | 180 |
| BfaI | CTAG | 2 cut(s) | 92, 147 |
| BfmI | CTRYAG | 1 cut(s) | 24 |
| BglII | AGATCT | 1 cut(s) | 13 |
| BisI | GCNGC | 1 cut(s) | 24 |
| BlsI | GCNGC | 1 cut(s) | 25 |
| BmsI | GCATC | 1 cut(s) | 114 |
| BpiI | GAAGAC | 1 cut(s) | 123 |
| BpuEI | CTTGAG | 1 cut(s) | 89 |
| BseGI | GGATG | 1 cut(s) | 191 |
| BseXI | GCAGC | 1 cut(s) | 10 |
| Bsp143I | GATC | 1 cut(s) | 13 |
| BspMAI | CTGCAG | 1 cut(s) | 28 |
| BssMI | GATC | 1 cut(s) | 13 |
| Bst4CI | ACNGT | 3 cut(s) | 122, 159, 218 |
| BstC8I | GCNNGC | 1 cut(s) | 208 |
| BstF5I | GGATG | 1 cut(s) | 191 |
| BstKTI | GATC | 1 cut(s) | 16 |
| BstMBI | GATC | 1 cut(s) | 13 |
| BstSFI | CTRYAG | 1 cut(s) | 24 |
| BstV1I | GCAGC | 1 cut(s) | 10 |
| BstV2I | GAAGAC | 1 cut(s) | 123 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BtsCI | GGATG | 1 cut(s) | 191 |
| BtsIMutI | CAGTG | 1 cut(s) | 164 |
| Cac8I | GCNNGC | 1 cut(s) | 208 |
| CviJI | RGCY | 4 cut(s) | 23, 111, 206, 210 |
| CviKI_1 | RGCY | 4 cut(s) | 23, 111, 206, 210 |
| DpnI | GATC | 1 cut(s) | 15 |
| DpnII | GATC | 1 cut(s) | 13 |
| DraIII | CACNNNGTG | 1 cut(s) | 159 |
| Eco57I | CTGAAG | 1 cut(s) | 135 |
| FaiI | YATR | 1 cut(s) | 175 |
| Fnu4HI | GCNGC | 1 cut(s) | 24 |
| FokI | GGATG | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 1 cut(s) | 24 |
| FspBI | CTAG | 2 cut(s) | 92, 147 |
| GluI | GCNGC | 1 cut(s) | 24 |
| HinfI | GANTC | 2 cut(s) | 143, 199 |
| Hpy188I | TCNGA | 1 cut(s) | 18 |
| Hpy188III | TCNNGA | 1 cut(s) | 147 |
| HpyCH4III | ACNGT | 3 cut(s) | 122, 159, 218 |
| HpyCH4V | TGCA | 2 cut(s) | 26, 105 |
| Kzo9I | GATC | 1 cut(s) | 13 |
| LpnPI | CCDG | 1 cut(s) | 126 |
| Lsp1109I | GCAGC | 1 cut(s) | 10 |
| LweI | GCATC | 1 cut(s) | 114 |
| MaeI | CTAG | 2 cut(s) | 92, 147 |
| MaeIII | GTNAC | 2 cut(s) | 61, 192 |
| MalI | GATC | 1 cut(s) | 15 |
| MboI | GATC | 1 cut(s) | 13 |
| MboII | GAAGA | 1 cut(s) | 128 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MluCI | AATT | 1 cut(s) | 78 |
| MnlI | CCTC | 1 cut(s) | 22 |
| NdeII | GATC | 1 cut(s) | 13 |
| PfeI | GAWTC | 2 cut(s) | 143, 199 |
| PkrI | GCNGC | 1 cut(s) | 25 |
| PstI | CTGCAG | 1 cut(s) | 28 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| SatI | GCNGC | 1 cut(s) | 24 |
| Sau3AI | GATC | 1 cut(s) | 13 |
| SetI | ASST | 2 cut(s) | 25, 97 |
| SfaNI | GCATC | 1 cut(s) | 114 |
| SfcI | CTRYAG | 1 cut(s) | 24 |
| SgeI | CNNG | 6 cut(s) | 80, 104, 125, 159, 176, 215 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| Sse9I | AATT | 1 cut(s) | 78 |
| SspI | AATATT | 1 cut(s) | 50 |
| SspMI | CTAG | 2 cut(s) | 92, 147 |
| TaaI | ACNGT | 3 cut(s) | 122, 159, 218 |
| TaqI | TCGA | 2 cut(s) | 97, 124 |
| TasI | AATT | 1 cut(s) | 78 |
| TfiI | GAWTC | 2 cut(s) | 143, 199 |
| TscAI | CASTG | 1 cut(s) | 164 |
| TseI | GCWGC | 1 cut(s) | 23 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 164 |
| XapI | RAATTY | 1 cut(s) | 78 |
| XbaI | TCTAGA | 1 cut(s) | 146 |
| XspI | CTAG | 2 cut(s) | 92, 147 |