Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000708.1

Orthogroup ID

OG0015736

Physical Location & Seq

Genomic Coordinates Reverse (-)

21109 .. 24913

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000708.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgtctagtttaactagacagtttaatttgtttcttgtgaatgtttgttgtactgatcgaacacctgttcaaggacaatcagcatatccctctggttctccatcaaaagccgtctgcatttctccatatcagagactgtctgctgatgttcctgtacaacttcatgagaggtttcaaggtgagagtatcactaggtccttagctataggggaacctggagaccatggagaagcacacttagtagctctgggtgaactagaattacagattcaagatgaggagacaaatggttactcggcacaatatttgtcaactggttttactgatatggggaacacagctaatgaaggtatttacagacatttcatctatttgcttttattcatggttttggctgccgattcacaaagcttagagagtgccataagatgtggtggtttagctaagaccaaagcttcttgtattaagaacatgctgagttgtttgctggagaagaaggaaaagcactggcgaccggtgaccggattctggcaaccgatgaccggaatccggcgaccggtcaccggaatctctaatctgactgccgaactggcttggaagttgatgatgactttgaggtggaaatggggttgggcttcgattggggaggattcgaggagcggcagactcctccttcttcgctgcagccccagaattttctctgggcaccagatcggatctatcgaagatgaaattgctatgggaacttcatcgacagccgtcaagtgggtggataaagatgttcgacgatggcagagctgcgatcagagaggtcgatggtggggattggttaggcgtcgggtcgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

282

Amino Acids

31.62

Weight (kDa)

8.93

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015736)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0350211 RchiOBHm_Chr4g0418181
rosa_laevigata	RLG00000013738 RLG00000019318
rosa_multiflora	Rmu_co8427249.1_g000001 Rmu_sc0000708.1_g000007
rosa_rugosa	Rorug02G0234700 Rorug02G0439900 Rorug02G0586800 Rorug07G0328500
rosa_samantha	Rh2DG276000 Rh3CG157200 Rh3DG074400 Rh5DG339100 Rh6CG133900 Rh7DG247500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	705
AccBSI	CCGCTC	1 cut(s)	660
AciI	CCGC	1 cut(s)	660
AclWI	GGATC	1 cut(s)	724
AcsI	RAATTY	1 cut(s)	693
AcyI	GRCGYC	1 cut(s)	835
AfaI	GTAC	2 cut(s)	52, 156
AfiI	CCNNNNNNNGG	8 cut(s)	71, 521, 528, 542, 549, 556, 563, 765
AgeI	ACCGGT	2 cut(s)	514, 556
AgsI	TTSAA	3 cut(s)	71, 176, 272
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	7 cut(s)	203, 245, 341, 411, 443, 455, 798
AluI	AGCT	7 cut(s)	203, 245, 341, 411, 443, 455, 798
Alw26I	GTCTC	3 cut(s)	127, 213, 275
AlwI	GGATC	1 cut(s)	724
AlwNI	CAGNNNCTG	1 cut(s)	136
ApeKI	GCWGC	4 cut(s)	395, 681, 684, 798
ApoI	RAATTY	1 cut(s)	693
AsiGI	ACCGGT	2 cut(s)	514, 556
AspS9I	GGNCC	1 cut(s)	195
AsuHPI	GGTGA	4 cut(s)	191, 263, 529, 553
AvaII	GGWCC	1 cut(s)	195
BaeGI	GKGCMC	1 cut(s)	708
BanI	GGYRCC	1 cut(s)	705
BbvI	GCAGC	4 cut(s)	382, 668, 696, 785
BccI	CCATC	3 cut(s)	109, 783, 810
BceAI	ACGGC	2 cut(s)	95, 743
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	3 cut(s)	127, 213, 275
BfaI	CTAG	4 cut(s)	6, 15, 192, 257
BfmI	CTRYAG	2 cut(s)	204, 682
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	5 cut(s)	396, 661, 682, 685, 799
BlsI	GCNGC	5 cut(s)	397, 662, 683, 686, 800
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	213, 707
BmrFI	CCNGG	1 cut(s)	216
BoxI	GACNNNNGTC	1 cut(s)	758
BpmI	CTGGAG	2 cut(s)	237, 509
Bpu10I	CCTNAGC	1 cut(s)	199
BsaHI	GRCGYC	1 cut(s)	835
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	5 cut(s)	514, 521, 542, 556, 563
Bsc4I	CCNNNNNNNGG	8 cut(s)	71, 521, 528, 542, 549, 556, 563, 765
Bse118I	RCCGGY	2 cut(s)	514, 556
Bse1I	ACTGG	3 cut(s)	319, 512, 594
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	223
BseLI	CCNNNNNNNGG	8 cut(s)	71, 521, 528, 542, 549, 556, 563, 765
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	3 cut(s)	319, 512, 594
BseRI	GAGGAG	3 cut(s)	293, 659, 670
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	4 cut(s)	382, 668, 696, 785
Bsh1285I	CGRYCG	2 cut(s)	515, 557
BshNI	GGYRCC	1 cut(s)	705
BshTI	ACCGGT	2 cut(s)	514, 556
BsiEI	CGRYCG	2 cut(s)	515, 557
BsiSI	CCGG	6 cut(s)	515, 522, 543, 550, 557, 564
BslI	CCNNNNNNNGG	8 cut(s)	71, 521, 528, 542, 549, 556, 563, 765
BsmAI	GTCTC	3 cut(s)	127, 213, 275
Bso31I	GGTCTC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	55, 711, 716, 802
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	1 cut(s)	660
BspCNI	CTCAG	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	213, 707
BspMAI	CTGCAG	1 cut(s)	686
BspPI	GGATC	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	705
BspTNI	GGTCTC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	660
BsrFI	RCCGGY	2 cut(s)	514, 556
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	3 cut(s)	319, 512, 594
BssAI	RCCGGY	2 cut(s)	514, 556
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	4 cut(s)	55, 711, 716, 802
BssNI	GRCGYC	1 cut(s)	835
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	21, 138
BstACI	GRCGYC	1 cut(s)	835
BstAUI	TGTACA	1 cut(s)	154
BstDEI	CTNAG	5 cut(s)	199, 238, 412, 444, 476
BstDSI	CCRYGG	1 cut(s)	223
BstEII	GGTNACC	2 cut(s)	517, 559
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstKTI	GATC	4 cut(s)	58, 714, 719, 805
BstMAI	GTCTC	3 cut(s)	127, 213, 275
BstMBI	GATC	4 cut(s)	55, 711, 716, 802
BstMCI	CGRYCG	2 cut(s)	515, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	475
BstPAI	GACNNNNGTC	1 cut(s)	758
BstPI	GGTNACC	2 cut(s)	517, 559
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	2 cut(s)	204, 682
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	4 cut(s)	382, 668, 696, 785
BstX2I	RGATCY	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	716
BtgI	CCRYGG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	505
CaiI	CAGNNNCTG	1 cut(s)	136
CciI	TCATGA	1 cut(s)	163
Cfr10I	RCCGGY	2 cut(s)	514, 556
Cfr13I	GGNCC	1 cut(s)	195
CseI	GACGC	1 cut(s)	824
Csp6I	GTAC	2 cut(s)	51, 155
CspAI	ACCGGT	2 cut(s)	514, 556
CviAII	CATG	4 cut(s)	164, 224, 385, 472
CviQI	GTAC	2 cut(s)	51, 155
DdeI	CTNAG	5 cut(s)	199, 238, 412, 444, 476
DpnI	GATC	4 cut(s)	57, 713, 718, 804
DpnII	GATC	4 cut(s)	55, 711, 716, 802
Eco130I	CCWWGG	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	195
Eco91I	GGTNACC	2 cut(s)	517, 559
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	195
EcoO65I	GGTNACC	2 cut(s)	517, 559
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	4 cut(s)	167, 227, 388, 475
FatI	CATG	4 cut(s)	163, 223, 384, 471
Fnu4HI	GCNGC	5 cut(s)	396, 661, 682, 685, 799
Fsp4HI	GCNGC	5 cut(s)	396, 661, 682, 685, 799
FspBI	CTAG	4 cut(s)	6, 15, 192, 257
GluI	GCNGC	5 cut(s)	396, 661, 682, 685, 799
GsuI	CTGGAG	2 cut(s)	237, 509
HapII	CCGG	6 cut(s)	515, 522, 543, 550, 557, 564
HgaI	GACGC	1 cut(s)	824
Hin1I	GRCGYC	1 cut(s)	835
Hin1II	CATG	4 cut(s)	167, 227, 388, 475
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HindIII	AAGCTT	2 cut(s)	409, 453
HinfI	GANTC	7 cut(s)	268, 401, 525, 546, 567, 650, 666
HpaII	CCGG	6 cut(s)	515, 522, 543, 550, 557, 564
HphI	GGTGA	4 cut(s)	191, 263, 529, 553
Hpy166II	GTNNAC	2 cut(s)	254, 312
Hpy188I	TCNGA	4 cut(s)	132, 579, 716, 807
Hpy188III	TCNNGA	2 cut(s)	164, 272
Hpy8I	GTNNAC	2 cut(s)	254, 312
Hpy99I	CGWCG	2 cut(s)	789, 840
HpyAV	CCTTC	3 cut(s)	341, 490, 683
HpyCH4III	ACNGT	2 cut(s)	21, 138
HpyCH4V	TGCA	2 cut(s)	117, 684
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	5 cut(s)	199, 238, 412, 444, 476
Hsp92I	GRCGYC	1 cut(s)	835
Hsp92II	CATG	4 cut(s)	167, 227, 388, 475
Kzo9I	GATC	4 cut(s)	55, 711, 716, 802
LmnI	GCTCC	1 cut(s)	657
Lsp1109I	GCAGC	4 cut(s)	382, 668, 696, 785
MaeI	CTAG	4 cut(s)	6, 15, 192, 257
MaeIII	GTNAC	3 cut(s)	290, 517, 559
MalI	GATC	4 cut(s)	57, 713, 718, 804
MbiI	CCGCTC	1 cut(s)	660
MboI	GATC	4 cut(s)	55, 711, 716, 802
MboII	GAAGA	3 cut(s)	505, 668, 737
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	4 cut(s)	25, 260, 693, 732
MlyI	GAGTC	1 cut(s)	660
MnlI	CCTC	8 cut(s)	100, 162, 271, 609, 640, 648, 680, 803
MseI	TTAA	3 cut(s)	11, 24, 465
MspI	CCGG	6 cut(s)	515, 522, 543, 550, 557, 564
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	4 cut(s)	55, 711, 716, 802
NlaIII	CATG	4 cut(s)	167, 227, 388, 475
NlaIV	GGNNCC	2 cut(s)	213, 707
NmeAIII	GCCGAG	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	517, 559
NspI	RCATGY	1 cut(s)	475
PagI	TCATGA	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	1 cut(s)	720
PfeI	GAWTC	6 cut(s)	268, 401, 525, 546, 567, 650
PinAI	ACCGGT	2 cut(s)	514, 556
PkrI	GCNGC	5 cut(s)	397, 662, 683, 686, 800
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
PpuMI	RGGWCCY	1 cut(s)	195
PshAI	GACNNNNGTC	1 cut(s)	758
Psp5II	RGGWCCY	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	214
PspEI	GGTNACC	2 cut(s)	517, 559
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	213, 707
PspPI	GGNCC	1 cut(s)	195
PspPPI	RGGWCCY	1 cut(s)	195
PsrI	GAACNNNNNNTAC	2 cut(s)	246, 278
PstI	CTGCAG	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	716
RsaI	GTAC	2 cut(s)	52, 156
RsaNI	GTAC	2 cut(s)	51, 155
SaqAI	TTAA	3 cut(s)	11, 24, 465
SatI	GCNGC	5 cut(s)	396, 661, 682, 685, 799
Sau3AI	GATC	4 cut(s)	55, 711, 716, 802
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	708
SfcI	CTRYAG	2 cut(s)	204, 682
SinI	GGWCC	1 cut(s)	195
Sse9I	AATT	4 cut(s)	25, 260, 693, 732
SsiI	CCGC	1 cut(s)	660
SspI	AATATT	1 cut(s)	305
SspMI	CTAG	4 cut(s)	6, 15, 192, 257
StyD4I	CCNGG	1 cut(s)	214
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	21, 138
TaqI	TCGA	7 cut(s)	58, 638, 653, 723, 752, 784, 814
TasI	AATT	4 cut(s)	25, 260, 693, 732
TatI	WGTACW	2 cut(s)	50, 154
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	6 cut(s)	268, 401, 525, 546, 567, 650
Tru1I	TTAA	3 cut(s)	11, 24, 465
Tru9I	TTAA	3 cut(s)	11, 24, 465
TscAI	CASTG	1 cut(s)	512
TseFI	GTSAC	2 cut(s)	517, 559
TseI	GCWGC	4 cut(s)	395, 681, 684, 798
Tsp45I	GTSAC	2 cut(s)	517, 559
TspDTI	ATGAA	6 cut(s)	152, 355, 360, 373, 738, 744
TspRI	CASTG	1 cut(s)	512
VpaK11BI	GGWCC	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	693
XceI	RCATGY	1 cut(s)	475
XspI	CTAG	4 cut(s)	6, 15, 192, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.