Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0350211 RchiOBHm_Chr4g0418181 |
| rosa_laevigata | RLG00000013738 RLG00000019318 |
| rosa_multiflora | Rmu_co8427249.1_g000001 Rmu_sc0000708.1_g000007 |
| rosa_rugosa | Rorug02G0234700 Rorug02G0439900 Rorug02G0586800 Rorug07G0328500 |
| rosa_samantha | Rh2DG276000 Rh3CG157200 Rh3DG074400 Rh5DG339100 Rh6CG133900 Rh7DG247500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 155 |
| AfaI | GTAC | 2 cut(s) | 51, 314 |
| AgsI | TTSAA | 3 cut(s) | 71, 252, 320 |
| AjnI | CCWGG | 1 cut(s) | 109 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 141, 173 |
| AluBI | AGCT | 3 cut(s) | 21, 140, 227 |
| AluI | AGCT | 3 cut(s) | 21, 140, 227 |
| Alw26I | GTCTC | 3 cut(s) | 22, 108, 161 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 31 |
| ApeKI | GCWGC | 1 cut(s) | 21 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| AspS9I | GGNCC | 1 cut(s) | 90 |
| AsuHPI | GGTGA | 2 cut(s) | 86, 158 |
| AvaII | GGWCC | 1 cut(s) | 90 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 228, 260 |
| BbvI | GCAGC | 1 cut(s) | 8 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 174, 208 |
| BciT130I | CCWGG | 1 cut(s) | 111 |
| BcoDI | GTCTC | 3 cut(s) | 22, 108, 161 |
| BfaI | CTAG | 2 cut(s) | 87, 152 |
| BisI | GCNGC | 1 cut(s) | 22 |
| BlsI | GCNGC | 1 cut(s) | 23 |
| Bme1390I | CCNGG | 1 cut(s) | 111 |
| Bme18I | GGWCC | 1 cut(s) | 90 |
| BmgT120I | GGNCC | 1 cut(s) | 90 |
| BmiI | GGNNCC | 1 cut(s) | 108 |
| BmrFI | CCNGG | 1 cut(s) | 111 |
| BpmI | CTGGAG | 1 cut(s) | 132 |
| BsaI | GGTCTC | 1 cut(s) | 108 |
| BsaJI | CCNNGG | 1 cut(s) | 118 |
| Bse1I | ACTGG | 1 cut(s) | 205 |
| BseBI | CCWGG | 1 cut(s) | 111 |
| BseDI | CCNNGG | 1 cut(s) | 118 |
| BseMII | CTCAG | 1 cut(s) | 108 |
| BseNI | ACTGG | 1 cut(s) | 205 |
| BseRI | GAGGAG | 1 cut(s) | 179 |
| BseXI | GCAGC | 1 cut(s) | 8 |
| BsmAI | GTCTC | 3 cut(s) | 22, 108, 161 |
| Bso31I | GGTCTC | 1 cut(s) | 108 |
| Bsp1407I | TGTACA | 1 cut(s) | 49 |
| Bsp19I | CCATGG | 1 cut(s) | 118 |
| BspCNI | CTCAG | 1 cut(s) | 107 |
| BspHI | TCATGA | 1 cut(s) | 58 |
| BspLI | GGNNCC | 1 cut(s) | 108 |
| BspTNI | GGTCTC | 1 cut(s) | 108 |
| BsrGI | TGTACA | 1 cut(s) | 49 |
| BsrI | ACTGG | 1 cut(s) | 205 |
| BssECI | CCNNGG | 1 cut(s) | 118 |
| BssT1I | CCWWGG | 1 cut(s) | 118 |
| Bst2UI | CCWGG | 1 cut(s) | 111 |
| Bst4CI | ACNGT | 1 cut(s) | 33 |
| BstAUI | TGTACA | 1 cut(s) | 49 |
| BstDEI | CTNAG | 2 cut(s) | 94, 133 |
| BstDSI | CCRYGG | 1 cut(s) | 118 |
| BstMAI | GTCTC | 3 cut(s) | 22, 108, 161 |
| BstNI | CCWGG | 1 cut(s) | 111 |
| BstSCI | CCNGG | 1 cut(s) | 109 |
| BstV1I | GCAGC | 1 cut(s) | 8 |
| BtgI | CCRYGG | 1 cut(s) | 118 |
| CaiI | CAGNNNCTG | 1 cut(s) | 31 |
| CciI | TCATGA | 1 cut(s) | 58 |
| Cfr13I | GGNCC | 1 cut(s) | 90 |
| Csp6I | GTAC | 2 cut(s) | 50, 313 |
| CviAII | CATG | 3 cut(s) | 59, 119, 161 |
| CviJI | RGCY | 3 cut(s) | 21, 140, 227 |
| CviKI_1 | RGCY | 3 cut(s) | 21, 140, 227 |
| CviQI | GTAC | 2 cut(s) | 50, 313 |
| DdeI | CTNAG | 2 cut(s) | 94, 133 |
| Eco130I | CCWWGG | 1 cut(s) | 118 |
| Eco31I | GGTCTC | 1 cut(s) | 108 |
| Eco47I | GGWCC | 1 cut(s) | 90 |
| EcoO109I | RGGNCCY | 1 cut(s) | 90 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoRII | CCWGG | 1 cut(s) | 109 |
| EcoT14I | CCWWGG | 1 cut(s) | 118 |
| ErhI | CCWWGG | 1 cut(s) | 118 |
| FaeI | CATG | 3 cut(s) | 62, 122, 164 |
| FaiI | YATR | 7 cut(s) | 60, 101, 120, 162, 215, 263, 328 |
| FatI | CATG | 3 cut(s) | 58, 118, 160 |
| Fnu4HI | GCNGC | 1 cut(s) | 22 |
| Fsp4HI | GCNGC | 1 cut(s) | 22 |
| FspBI | CTAG | 2 cut(s) | 87, 152 |
| GluI | GCNGC | 1 cut(s) | 22 |
| GsuI | CTGGAG | 1 cut(s) | 132 |
| Hin1II | CATG | 3 cut(s) | 62, 122, 164 |
| HincII | GTYRAC | 1 cut(s) | 198 |
| HindII | GTYRAC | 1 cut(s) | 198 |
| HphI | GGTGA | 2 cut(s) | 86, 158 |
| Hpy166II | GTNNAC | 3 cut(s) | 9, 149, 198 |
| Hpy188III | TCNNGA | 1 cut(s) | 59 |
| Hpy8I | GTNNAC | 3 cut(s) | 9, 149, 198 |
| HpyCH4III | ACNGT | 1 cut(s) | 33 |
| HpyF3I | CTNAG | 2 cut(s) | 94, 133 |
| Hsp92II | CATG | 3 cut(s) | 62, 122, 164 |
| LpnPI | CCDG | 6 cut(s) | 38, 60, 96, 123, 128, 186 |
| Lsp1109I | GCAGC | 1 cut(s) | 8 |
| MaeI | CTAG | 2 cut(s) | 87, 152 |
| MaeIII | GTNAC | 2 cut(s) | 176, 243 |
| MboII | GAAGA | 3 cut(s) | 245, 248, 297 |
| MluCI | AATT | 2 cut(s) | 155, 239 |
| MnlI | CCTC | 4 cut(s) | 57, 97, 103, 157 |
| MspA1I | CMGCKG | 1 cut(s) | 227 |
| MspR9I | CCNGG | 1 cut(s) | 111 |
| MvaI | CCWGG | 1 cut(s) | 111 |
| NcoI | CCATGG | 1 cut(s) | 118 |
| NlaIII | CATG | 3 cut(s) | 62, 122, 164 |
| NlaIV | GGNNCC | 1 cut(s) | 108 |
| NmeAIII | GCCGAG | 1 cut(s) | 161 |
| PagI | TCATGA | 1 cut(s) | 58 |
| PkrI | GCNGC | 1 cut(s) | 23 |
| PpuMI | RGGWCCY | 1 cut(s) | 90 |
| Psp5II | RGGWCCY | 1 cut(s) | 90 |
| Psp6I | CCWGG | 1 cut(s) | 109 |
| PspGI | CCWGG | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 1 cut(s) | 108 |
| PspPI | GGNCC | 1 cut(s) | 90 |
| PspPPI | RGGWCCY | 1 cut(s) | 90 |
| PstNI | CAGNNNCTG | 1 cut(s) | 31 |
| PvuII | CAGCTG | 1 cut(s) | 227 |
| RsaI | GTAC | 2 cut(s) | 51, 314 |
| RsaNI | GTAC | 2 cut(s) | 50, 313 |
| SatI | GCNGC | 1 cut(s) | 22 |
| Sau96I | GGNCC | 1 cut(s) | 90 |
| ScrFI | CCNGG | 1 cut(s) | 111 |
| SetI | ASST | 7 cut(s) | 23, 68, 76, 92, 112, 142, 229 |
| SinI | GGWCC | 1 cut(s) | 90 |
| Sse9I | AATT | 2 cut(s) | 155, 239 |
| SspI | AATATT | 1 cut(s) | 191 |
| SspMI | CTAG | 2 cut(s) | 87, 152 |
| StyD4I | CCNGG | 1 cut(s) | 109 |
| StyI | CCWWGG | 1 cut(s) | 118 |
| TaaI | ACNGT | 1 cut(s) | 33 |
| TasI | AATT | 2 cut(s) | 155, 239 |
| TatI | WGTACW | 2 cut(s) | 49, 312 |
| TseI | GCWGC | 1 cut(s) | 21 |
| TspDTI | ATGAA | 2 cut(s) | 47, 246 |
| VpaK11BI | GGWCC | 1 cut(s) | 90 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XspI | CTAG | 2 cut(s) | 87, 152 |