Rh7DG247500

At4g15545-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015736
Physical Location & Seq
Forward (+)
25516542 .. 25543517
26976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG247500.1

Sequence Viewer

Length: 372 bp
ATGGGTATTGGCCTATTGGCATGTGGAGGTTTCAAACCCATTTTGGATAGGATGATGTTTCGCATGTATAGGGATTTGGGGCATGGGGTGGAATTGGAAAAGCAGCGATTAATTGCATATCTCTGTGAGAGTATCACTAGGTCCTTAGCTATAGAGGAACTTGGAGACCATGGAGAAGCACACTTAGTAGCTCTGGGTGAACTAGAATTACAGATTCAAGATGAGGAGACAAATGGTTACTCGGCACAATATTCGTCAACTGGTTTTACTGATATGGGGAACACAGGTAATGAAGGTATTTACAGACATTTCATCTATTTGCTTTTATTCATGGTGAGTGGTGAATGCATCTATTTGTACTCCTCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

4.71

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 359
AgsI TTSAA 2 cut(s) 34, 218
AluBI AGCT 2 cut(s) 149, 191
AluI AGCT 2 cut(s) 149, 191
Alw26I GTCTC 2 cut(s) 159, 221
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 103
AseI ATTAAT 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 209, 346, 353
AvaII GGWCC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 234, 268
BcoDI GTCTC 2 cut(s) 159, 221
BfaI CTAG 2 cut(s) 138, 203
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 239, 352
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 159, 221
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 169
BspANI GGCC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 145, 184
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 57
BstMAI GTCTC 2 cut(s) 159, 221
BstNSI RCATGY 2 cut(s) 24, 67
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 358
CviAII CATG 5 cut(s) 21, 64, 83, 170, 331
CviJI RGCY 3 cut(s) 12, 149, 191
CviKI_1 RGCY 3 cut(s) 12, 149, 191
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 2 cut(s) 145, 184
Eco130I CCWWGG 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 5 cut(s) 24, 67, 86, 173, 334
FaiI YATR 9 cut(s) 22, 65, 69, 84, 118, 152, 171, 275, 332
FatI CATG 5 cut(s) 20, 63, 82, 169, 330
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 2 cut(s) 138, 203
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 12
Hin1II CATG 5 cut(s) 24, 67, 86, 173, 334
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 1 cut(s) 214
HphI GGTGA 3 cut(s) 209, 346, 353
Hpy166II GTNNAC 2 cut(s) 200, 258
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 2 cut(s) 200, 258
HpyAV CCTTC 1 cut(s) 287
HpyCH4V TGCA 2 cut(s) 116, 348
HpyF3I CTNAG 2 cut(s) 145, 184
Hsp92II CATG 5 cut(s) 24, 67, 86, 173, 334
LpnPI CCDG 3 cut(s) 179, 246, 270
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 357
MaeI CTAG 2 cut(s) 138, 203
MaeIII GTNAC 1 cut(s) 236
MluCI AATT 4 cut(s) 92, 111, 206, 367
MnlI CCTC 3 cut(s) 20, 148, 217
Mph1103I ATGCAT 1 cut(s) 350
MseI TTAA 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 350
NcoI CCATGG 1 cut(s) 169
NlaIII CATG 5 cut(s) 24, 67, 86, 173, 334
NmeAIII GCCGAG 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 350
NspI RCATGY 2 cut(s) 24, 67
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 105
PpuMI RGGWCCY 1 cut(s) 141
PshBI ATTAAT 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 141
PspPI GGNCC 1 cut(s) 141
PspPPI RGGWCCY 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 192, 224
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 1 cut(s) 104
Sau96I GGNCC 1 cut(s) 141
SetI ASST 6 cut(s) 31, 143, 151, 193, 289, 298
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 141
Sse9I AATT 4 cut(s) 92, 111, 206, 367
SspI AATATT 1 cut(s) 251
SspMI CTAG 2 cut(s) 138, 203
StyI CCWWGG 1 cut(s) 169
TaqI TCGA 1 cut(s) 365
TasI AATT 4 cut(s) 92, 111, 206, 367
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 301, 306, 319
VpaK11BI GGWCC 1 cut(s) 141
VspI ATTAAT 1 cut(s) 110
XceI RCATGY 2 cut(s) 24, 67
XspI CTAG 2 cut(s) 138, 203
Zsp2I ATGCAT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.