Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012010

Physical Location & Seq

Genomic Coordinates Reverse (-)

44977634 .. 44980756

Gene Structure 3123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCAGAGAGGGAAAACCAAGAAGCAAATCAATTTGGGGATGGGTTGACTCACAATATGCTGAATGATATTCATAACCATTGGAAACATGAAGAAGCAGTGAGGATAAAATGTCAAGGTGTTCCGACTGTTGACATGAGAAATGTTTGCACCCAGCTCGAGGACAAAACCTTTGGAAAGATCATCTGCAGGCATGGTAGTCTAATCATATTGTTCAGAGGCAGGAACTATAATCCCAAGAAGAGGCCTGTGATTCCATTAATGTTGTGGAAGCCACATGAGCCAAAATATCCCAAACTGATCAAAACTGCGATTGATGGGCTAAGCATTGAGGAAACAAAGGAAATGAGGAAGAGAGGATTAGTTGTCCCTGCTTTAACAAAACTTGCCAGGAATGGTTACTATGGTAATCTGGTACCGATGGTTAGAGATGCGTTTCTCTCCTCTGAGCTGGTGCGGATAGACTGCCAGGGTCTTGAGAAGAGTGATTACAAGAAAATAGGCTGCAAACTTCGGGAGCTTGTGCCTTGTATCCTGGTGACGTTTGATAAGGAACAGATTGTGGTTTGGAAGGGCAAGGACTATAAGCCTGTAGAGGATGCCTACTTCCTTCCAGAACAAGAACTGTTTGATAGTCCAGAAAGTGATGTGGTTTCTGGTGCAGAGCGGTGGGATAGCTCAGACGACAATAGTAGCCAAACTGAGTACTACTCTGGTGACGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010257 GO:0010467 GO:0016043 GO:0016070 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0032981 GO:0033108 GO:0033617 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

242

Amino Acids

27.89

Weight (kDa)

5.94

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRS1_YhbY	PF01985	14 - 73	5.3e-14	CRS1 / YhbY (CRM) domain
CRS1_YhbY	PF01985	108 - 191	8.2e-12	CRS1 / YhbY (CRM) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31010 AT4G31010
fragaria_vesca	FvH4_7g12730
malus_domestica	MD02G1197200.v1.1 MD07G1124100.v1.1
prunus_persica	Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1 Prupe.2G151400_v2.0.a1
pyrus_communis	pycom02g16050
rosa_chinensis	RchiOBHm_Chr1g0351741
rosa_laevigata	RLG00000028386
rosa_multiflora	Rmu_sc0001933.1_g000016
rosa_roxburghii	Rroxscaffold_4G00303580
rosa_rugosa	Rorug01G0221100
rosa_samantha	Rh1AG235000 Rh1BG205600 Rh1CG219700 Rh1DG232600
rosa_wichuraiana	Rw1G020460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	667
AciI	CCGC	2 cut(s)	457, 667
AfaI	GTAC	2 cut(s)	417, 707
AfiI	CCNNNNNNNGG	2 cut(s)	160, 243
AjnI	CCWGG	3 cut(s)	389, 468, 534
AluBI	AGCT	4 cut(s)	157, 451, 520, 678
AluI	AGCT	4 cut(s)	157, 451, 520, 678
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	504
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AseI	ATTAAT	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	415
AsuHPI	GGTGA	2 cut(s)	550, 728
AvaI	CYCGRG	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	415
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	3 cut(s)	35, 311, 415
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciT130I	CCWGG	3 cut(s)	391, 470, 536
BciVI	GTATCC	1 cut(s)	542
BclI	TGATCA	1 cut(s)	300
BfmI	CTRYAG	2 cut(s)	187, 591
BfuI	GTATCC	1 cut(s)	542
BisI	GCNGC	1 cut(s)	505
BlpI	GCTNAGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	506
BmcAI	AGTACT	1 cut(s)	707
Bme1390I	CCNGG	3 cut(s)	391, 470, 536
BmeT110I	CYCGRG	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	3 cut(s)	391, 470, 536
BmsI	GCATC	2 cut(s)	421, 589
BplI	GAGNNNNNCTC	2 cut(s)	695, 727
Bpu1102I	GCTNAGC	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 243
BseBI	CCWGG	3 cut(s)	391, 470, 536
BseDI	CCNNGG	1 cut(s)	469
BseGI	GGATG	2 cut(s)	46, 604
BseLI	CCNNNNNNNGG	2 cut(s)	160, 243
BseMII	CTCAG	3 cut(s)	438, 693, 693
BseRI	GAGGAG	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	491
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	681
BshFI	GGCC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	160, 243
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	247
BsoBI	CYCGRG	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	180, 300
Bsp1720I	GCTNAGC	1 cut(s)	323
BspACI	CCGC	2 cut(s)	457, 667
BspANI	GGCC	1 cut(s)	247
BspCNI	CTCAG	3 cut(s)	439, 692, 694
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	2 cut(s)	180, 300
Bst2UI	CCWGG	3 cut(s)	391, 470, 536
Bst4CI	ACNGT	2 cut(s)	130, 627
Bst6I	CTCTTC	3 cut(s)	236, 347, 476
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	4 cut(s)	323, 447, 679, 702
BstF5I	GGATG	2 cut(s)	46, 604
BstKTI	GATC	2 cut(s)	183, 303
BstMBI	GATC	2 cut(s)	180, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	3 cut(s)	391, 470, 536
BstSCI	CCNGG	3 cut(s)	389, 468, 534
BstSFI	CTRYAG	2 cut(s)	187, 591
BstV1I	GCAGC	1 cut(s)	491
BsuI	GTATCC	1 cut(s)	542
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	46, 604
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	416, 706
CviAII	CATG	4 cut(s)	89, 136, 194, 278
CviQI	GTAC	2 cut(s)	416, 706
DdeI	CTNAG	4 cut(s)	323, 447, 679, 702
DpnI	GATC	2 cut(s)	182, 302
DpnII	GATC	2 cut(s)	180, 300
Eam1104I	CTCTTC	3 cut(s)	236, 347, 476
EarI	CTCTTC	3 cut(s)	236, 347, 476
Eco147I	AGGCCT	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	158
EcoRII	CCWGG	3 cut(s)	389, 468, 534
FaeI	CATG	4 cut(s)	92, 139, 197, 281
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	4 cut(s)	88, 135, 193, 277
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	505
FokI	GGATG	2 cut(s)	53, 611
Fsp4HI	GCNGC	1 cut(s)	505
GluI	GCNGC	1 cut(s)	505
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	247
Hin1II	CATG	4 cut(s)	92, 139, 197, 281
HincII	GTYRAC	2 cut(s)	48, 133
HindII	GTYRAC	2 cut(s)	48, 133
HinfI	GANTC	2 cut(s)	49, 253
HphI	GGTGA	2 cut(s)	550, 728
Hpy166II	GTNNAC	2 cut(s)	48, 133
Hpy188I	TCNGA	5 cut(s)	7, 126, 218, 448, 682
Hpy188III	TCNNGA	4 cut(s)	476, 515, 614, 638
Hpy8I	GTNNAC	2 cut(s)	48, 133
HpyAV	CCTTC	2 cut(s)	565, 620
HpyCH4III	ACNGT	2 cut(s)	130, 627
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	4 cut(s)	150, 189, 507, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	4 cut(s)	323, 447, 679, 702
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	4 cut(s)	92, 139, 197, 281
KpnI	GGTACC	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	180, 300
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	2 cut(s)	421, 589
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	3 cut(s)	398, 538, 716
MalI	GATC	2 cut(s)	182, 302
MbiI	CCGCTC	1 cut(s)	667
MboI	GATC	2 cut(s)	180, 300
MboII	GAAGA	4 cut(s)	104, 253, 364, 493
MluCI	AATT	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	149
MseI	TTAA	2 cut(s)	260, 377
MspR9I	CCNGG	3 cut(s)	391, 470, 536
MvaI	CCWGG	3 cut(s)	391, 470, 536
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	2 cut(s)	180, 300
NlaIII	CATG	4 cut(s)	92, 139, 197, 281
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	2 cut(s)	538, 716
PaeR7I	CTCGAG	1 cut(s)	158
PceI	AGGCCT	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	506
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	260
Psp6I	CCWGG	3 cut(s)	389, 468, 534
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	3 cut(s)	389, 468, 534
PspN4I	GGNNCC	1 cut(s)	417
PspXI	VCTCGAGB	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	417, 707
RsaNI	GTAC	2 cut(s)	416, 706
SaqAI	TTAA	2 cut(s)	260, 377
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	2 cut(s)	180, 300
ScaI	AGTACT	1 cut(s)	707
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	3 cut(s)	391, 470, 536
SetI	ASST	7 cut(s)	121, 159, 173, 453, 522, 545, 680
SfaNI	GCATC	2 cut(s)	421, 589
SfcI	CTRYAG	2 cut(s)	187, 591
Sfr274I	CTCGAG	1 cut(s)	158
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	2 cut(s)	158, 476
SmoI	CTYRAG	2 cut(s)	158, 476
Sse9I	AATT	1 cut(s)	32
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	457, 667
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	3 cut(s)	389, 468, 534
TaaI	ACNGT	2 cut(s)	130, 627
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	32
TatI	WGTACW	1 cut(s)	705
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	260, 377
Tru9I	TTAA	2 cut(s)	260, 377
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	538, 716
TseI	GCWGC	1 cut(s)	504
Tsp45I	GTSAC	2 cut(s)	538, 716
TspDTI	ATGAA	2 cut(s)	62, 105
TspRI	CASTG	1 cut(s)	105
VspI	ATTAAT	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
XhoI	CTCGAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.