RchiOBHm_Chr1g0352121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012879
Physical Location & Seq
Reverse (-)
45356009 .. 45359107
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1350 bp
ATGTGTTCTTCTAGTTCTTCATGCTCATACAAGAATGTGGATCAGAAAAAGCCTTTTCCAATAGAGCGCAGGCCAACAATGCTCAAGGATTTCCTCAATGAAAATTCCAATTCATGTTCTTCAAGTGTGTTCAAATCATTTCCAAGAAAACCACAACTTGATTGCAAAGCAAGAAACCCAAATCCCAAACCCAATACCACCATTACTAGCAAGTTACATAGAAGCAGATCAAAAGCAGCATCTACCACAATCTCAGCATTCCAGTCCTTCATGAATGTGGTAAAAAACATCCAATTTACTGCAGTAAAAACTCCCTCCCTTTTACCACGGAGCCTCTCACGGCGGCTGTCCAAAAAGAGCTCATGGTCAAGGAAGCAGAGTCTTCAAACTCAAGTCCAAGTCAGTGTGAAAGTCAAAGATATCCTACGGTGGACATCATTCCGCGATGAGAGGTTACCTCAATCTCTGCCGTGGGATTTCGCTTCTTCACCTCACCATTGTACCACAGCCACCACCGTAACAGAGTCCACAACTACTACTACTTGTAGTAATAGCAGCAATGGGTCAAGTTGGTGTGACAGTGATTTTACCGCGGAGTTTTTACCGTCCCCGTTTGGTGGTAAAAATGAGATGGGTAAAAAGTATTCACCATGTGTCGGCAGGAATTCCACGGAGGCTACGGCAGGGACAGCAAGATGCGGTGAATTGGACCCCAAGGTTGAGGTGCTATTTTGTGATGAAGATGAACAACACAGCCCAGTTTCTGTGCTCGATTTTCAATTTGGGGAAGACGATGAAGAGGCATTTTCGACCACTTTTGACCAAAGCCTTGCCAATGTGGAGAGAACGAAAGAAATGCTTATGCAAAGGATCAAGCACTTTGAGAGTCTTGCCAACCTAGACGCTGATTTCGACTCATGGTTGTCACCGGAAGAAGGTATCAACTTCGAAGAAGAAGAAGAGCATGGAATTGAAGAGAGGGCATTGGAACTGTTGAATTTTGTCAGAGCAACTAGCTTAAAACCAGAGAGCTGTGAGTACGAAATGGAAGATAAACTATTGTTGGATTTCTTCAGGGAAGAATTGGGTGCACAAAGAAATTATCAAACAGATGATGGGTTTAATTGGGAGATCGTTAGCAAAGCAAAAGCTTGGATTAGTGAGGAAAAAACTGGACCCTTTGAGTGGGGACTTGAGCACAAGAAAGAAGCCTTTGTTAGAGATATGCATAAAGGAGGGAAGTGGCTTAACAAGTTTGAGGATGAGAAAGAGGAGTTGGCTTTACAAATCGAGACTGCCGTGCTTGAGTTCTTGGTGGATGAGCTTTCGGTTGATCTCTTATTGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

449

Amino Acids

51.14

Weight (kDa)

5.23

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012879)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00770
fragaria_vesca FvH4_7g12980
malus_domestica MD01G1047600.v1.1 MD07G1125600.v1.1
prunus_persica Prupe.2G153900_v2.0.a1
pyrus_communis pycom01g07320
rosa_chinensis RchiOBHm_Chr1g0352121
rosa_laevigata RLG00000028359
rosa_multiflora Rmu_sc0001599.1_g000008 Rmu_sc0011547.1_g000002 Rmu_sc0040617.1_g000001
rosa_roxburghii Rroxscaffold_4G00303190
rosa_rugosa Rorug01G0224800
rosa_samantha Rh1AG238800 Rh1BG209800 Rh1CG223400 Rh1DG236600
rosa_wichuraiana Rw1G020750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 444, 593
AciI CCGC 5 cut(s) 343, 442, 591, 593, 699
AclWI GGATC 2 cut(s) 48, 878
AcsI RAATTY 3 cut(s) 103, 664, 997
AcuI CTGAAG 1 cut(s) 1057
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 502, 1040
AfiI CCNNNNNNNGG 4 cut(s) 617, 656, 935, 1185
AgsI TTSAA 6 cut(s) 123, 133, 386, 779, 974, 997
AjuI GAANNNNNNNTTGG 2 cut(s) 1259, 1291
AluBI AGCT 5 cut(s) 360, 1017, 1032, 1151, 1324
AluI AGCT 5 cut(s) 360, 1017, 1032, 1151, 1324
Alw21I GWGCWC 4 cut(s) 362, 771, 1093, 1200
Alw26I GTCTC 1 cut(s) 1286
Alw44I GTGCAC 1 cut(s) 1089
AlwI GGATC 2 cut(s) 48, 878
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 1089
ApeKI GCWGC 2 cut(s) 236, 555
ApoI RAATTY 3 cut(s) 103, 664, 997
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 709, 1175
AsuHPI GGTGA 5 cut(s) 480, 485, 639, 713, 918
AsuII TTCGAA 1 cut(s) 948
AvaII GGWCC 2 cut(s) 709, 1175
BaeGI GKGCMC 1 cut(s) 1093
BaeI ACNNNNGTAYC 2 cut(s) 484, 517
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 374, 795
Bbv12I GWGCWC 4 cut(s) 362, 771, 1093, 1200
BbvI GCAGC 2 cut(s) 248, 567
BccI CCATC 2 cut(s) 625, 1109
BceAI ACGGC 4 cut(s) 356, 454, 696, 1283
BcgI CGANNNNNNTGC 2 cut(s) 838, 872
BcoDI GTCTC 1 cut(s) 1286
BfaI CTAG 4 cut(s) 12, 207, 899, 1014
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 3 cut(s) 237, 344, 556
BlsI GCNGC 3 cut(s) 238, 345, 557
Bme18I GGWCC 2 cut(s) 709, 1175
BmgT120I GGNCC 2 cut(s) 709, 1175
BmiI GGNNCC 3 cut(s) 332, 711, 1177
BmrI ACTGGG 1 cut(s) 752
BmsI GCATC 2 cut(s) 248, 686
BmuI ACTGGG 1 cut(s) 752
BpiI GAAGAC 2 cut(s) 374, 795
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bpu14I TTCGAA 1 cut(s) 948
BpuEI CTTGAG 4 cut(s) 68, 375, 1214, 1325
BsaJI CCNNGG 5 cut(s) 326, 470, 591, 669, 714
BsaWI WCCGGW 1 cut(s) 928
Bsc4I CCNNNNNNNGG 4 cut(s) 617, 656, 935, 1185
Bse1I ACTGG 3 cut(s) 262, 758, 1177
Bse3DI GCAATG 1 cut(s) 565
BseDI CCNNGG 5 cut(s) 326, 470, 591, 669, 714
BseGI GGATG 3 cut(s) 288, 1267, 1324
BseLI CCNNNNNNNGG 4 cut(s) 617, 656, 935, 1185
BseMI GCAATG 1 cut(s) 565
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 3 cut(s) 262, 758, 1177
BseRI GAGGAG 1 cut(s) 1286
BseSI GKGCMC 1 cut(s) 1093
BseXI GCAGC 2 cut(s) 248, 567
Bsh1236I CGCG 2 cut(s) 444, 593
BshFI GGCC 1 cut(s) 73
BsiHKAI GWGCWC 4 cut(s) 362, 771, 1093, 1200
BsiSI CCGG 1 cut(s) 929
BslFI GGGAC 3 cut(s) 592, 700, 1203
BslI CCNNNNNNNGG 4 cut(s) 617, 656, 935, 1185
BsmAI GTCTC 1 cut(s) 1286
BsmFI GGGAC 3 cut(s) 592, 700, 1203
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 948
Bsp1286I GDGCHC 4 cut(s) 362, 771, 1093, 1200
Bsp143I GATC 5 cut(s) 40, 227, 870, 1131, 1333
BspACI CCGC 5 cut(s) 343, 442, 591, 593, 699
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 2 cut(s) 444, 593
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 3 cut(s) 332, 711, 1177
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 2 cut(s) 48, 878
BspQI GCTCTTC 1 cut(s) 954
BspT104I TTCGAA 1 cut(s) 948
BsrDI GCAATG 1 cut(s) 565
BsrI ACTGG 3 cut(s) 262, 758, 1177
BssECI CCNNGG 5 cut(s) 326, 470, 591, 669, 714
BssMI GATC 5 cut(s) 40, 227, 870, 1131, 1333
BssT1I CCWWGG 1 cut(s) 714
Bst4CI ACNGT 5 cut(s) 429, 517, 581, 606, 993
Bst6I CTCTTC 3 cut(s) 792, 954, 969
BstBI TTCGAA 1 cut(s) 948
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 253
BstDSI CCRYGG 4 cut(s) 326, 470, 591, 669
BstEII GGTNACC 1 cut(s) 453
BstF5I GGATG 3 cut(s) 288, 1267, 1324
BstFNI CGCG 2 cut(s) 444, 593
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 5 cut(s) 43, 230, 873, 1134, 1336
BstMAI GTCTC 1 cut(s) 1286
BstMBI GATC 5 cut(s) 40, 227, 870, 1131, 1333
BstMWI GCNNNNNNNGC 2 cut(s) 79, 689
BstPI GGTNACC 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 1093
BstUI CGCG 2 cut(s) 444, 593
BstV1I GCAGC 2 cut(s) 248, 567
BstV2I GAAGAC 2 cut(s) 374, 795
BsuRI GGCC 1 cut(s) 73
BtgI CCRYGG 4 cut(s) 326, 470, 591, 669
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 3 cut(s) 288, 1267, 1324
BtsIMutI CAGTG 2 cut(s) 409, 586
Cac8I GCNNGC 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 764
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 709, 1175
Cfr42I CCGCGG 1 cut(s) 594
CseI GACGC 1 cut(s) 911
Csp6I GTAC 2 cut(s) 501, 1039
CviAII CATG 7 cut(s) 21, 114, 271, 363, 651, 918, 965
CviQI GTAC 2 cut(s) 501, 1039
DdeI CTNAG 1 cut(s) 253
DpnI GATC 5 cut(s) 42, 229, 872, 1133, 1335
DpnII GATC 5 cut(s) 40, 227, 870, 1131, 1333
DraIII CACNNNGTG 1 cut(s) 653
Eam1104I CTCTTC 3 cut(s) 792, 954, 969
EarI CTCTTC 3 cut(s) 792, 954, 969
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 714
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 709, 1175
Eco53kI GAGCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 1057
Eco91I GGTNACC 1 cut(s) 453
EcoICRI GAGCTC 1 cut(s) 360
EcoO65I GGTNACC 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 664
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 714
EcoT22I ATGCAT 1 cut(s) 1230
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 7 cut(s) 24, 117, 274, 366, 654, 921, 968
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 3 cut(s) 592, 700, 1203
FatI CATG 7 cut(s) 20, 113, 270, 362, 650, 917, 964
Fnu4HI GCNGC 3 cut(s) 237, 344, 556
FokI GGATG 3 cut(s) 275, 1274, 1331
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 237, 344, 556
FspBI CTAG 4 cut(s) 12, 207, 899, 1014
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 237, 344, 556
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 929
HgaI GACGC 1 cut(s) 911
HhaI GCGC 1 cut(s) 69
Hin1II CATG 7 cut(s) 24, 117, 274, 366, 654, 921, 968
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1149
HinfI GANTC 4 cut(s) 379, 524, 886, 914
HpaII CCGG 1 cut(s) 929
HphI GGTGA 5 cut(s) 480, 485, 639, 713, 918
Hpy166II GTNNAC 3 cut(s) 432, 528, 1091
Hpy188I TCNGA 2 cut(s) 45, 1007
Hpy188III TCNNGA 2 cut(s) 271, 1291
Hpy8I GTNNAC 3 cut(s) 432, 528, 1091
HpyAV CCTTC 2 cut(s) 277, 929
HpyCH4III ACNGT 5 cut(s) 429, 517, 581, 606, 993
HpyCH4V TGCA 5 cut(s) 165, 302, 865, 1091, 1228
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 689
HpyF3I CTNAG 1 cut(s) 253
Hsp92II CATG 7 cut(s) 24, 117, 274, 366, 654, 921, 968
HspAI GCGC 1 cut(s) 67
KspI CCGCGG 1 cut(s) 594
Kzo9I GATC 5 cut(s) 40, 227, 870, 1131, 1333
LguI GCTCTTC 1 cut(s) 954
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 9 cut(s) 55, 275, 646, 669, 771, 942, 1038, 1060, 1158
Lsp1109I GCAGC 2 cut(s) 248, 567
LweI GCATC 2 cut(s) 248, 686
MaeI CTAG 4 cut(s) 12, 207, 899, 1014
MaeIII GTNAC 5 cut(s) 213, 453, 517, 575, 924
MalI GATC 5 cut(s) 42, 229, 872, 1133, 1335
MboI GATC 5 cut(s) 40, 227, 870, 1131, 1333
MhlI GDGCHC 4 cut(s) 362, 771, 1093, 1200
MlyI GAGTC 4 cut(s) 388, 533, 895, 908
MmeI TCCRAC 1 cut(s) 1044
Mph1103I ATGCAT 1 cut(s) 1230
MseI TTAA 3 cut(s) 1019, 1122, 1248
MslI CAYNNNNRTG 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 1 cut(s) 929
Mva1269I GAATGC 1 cut(s) 257
MvnI CGCG 2 cut(s) 444, 593
MwoI GCNNNNNNNGC 2 cut(s) 79, 689
NdeII GATC 5 cut(s) 40, 227, 870, 1131, 1333
NlaIII CATG 7 cut(s) 24, 117, 274, 366, 654, 921, 968
NlaIV GGNNCC 3 cut(s) 332, 711, 1177
NmuCI GTSAC 2 cut(s) 575, 924
NsiI ATGCAT 1 cut(s) 1230
NspV TTCGAA 1 cut(s) 948
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 954
PcsI WCGNNNNNNNCGW 2 cut(s) 909, 1296
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 238, 345, 557
PleI GAGTC 4 cut(s) 387, 532, 894, 908
PpsI GAGTC 4 cut(s) 387, 532, 894, 908
Psp124BI GAGCTC 1 cut(s) 362
PspEI GGTNACC 1 cut(s) 453
PspN4I GGNNCC 3 cut(s) 332, 711, 1177
PspPI GGNCC 2 cut(s) 709, 1175
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 764
RsaI GTAC 2 cut(s) 502, 1040
RsaNI GTAC 2 cut(s) 501, 1039
RseI CAYNNNNRTG 1 cut(s) 275
SacI GAGCTC 1 cut(s) 362
SacII CCGCGG 1 cut(s) 594
SapI GCTCTTC 1 cut(s) 954
SaqAI TTAA 3 cut(s) 1019, 1122, 1248
SatI GCNGC 3 cut(s) 237, 344, 556
Sau3AI GATC 5 cut(s) 40, 227, 870, 1131, 1333
Sau96I GGNCC 2 cut(s) 709, 1175
SchI GAGTC 4 cut(s) 388, 533, 895, 908
SduI GDGCHC 4 cut(s) 362, 771, 1093, 1200
SfaNI GCATC 2 cut(s) 248, 686
SfcI CTRYAG 1 cut(s) 300
Sfr303I CCGCGG 1 cut(s) 594
SfuI TTCGAA 1 cut(s) 948
SgrBI CCGCGG 1 cut(s) 594
SinI GGWCC 2 cut(s) 709, 1175
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 4 cut(s) 83, 390, 1193, 1304
SmoI CTYRAG 4 cut(s) 83, 390, 1193, 1304
SsiI CCGC 5 cut(s) 343, 442, 591, 593, 699
SspMI CTAG 4 cut(s) 12, 207, 899, 1014
SstI GAGCTC 1 cut(s) 362
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 5 cut(s) 429, 517, 581, 606, 993
TaqI TCGA 5 cut(s) 771, 809, 912, 948, 1290
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 1019, 1122, 1248
Tru9I TTAA 3 cut(s) 1019, 1122, 1248
TscAI CASTG 2 cut(s) 409, 586
TseFI GTSAC 2 cut(s) 575, 924
TseI GCWGC 2 cut(s) 236, 555
Tsp45I GTSAC 2 cut(s) 575, 924
TspDTI ATGAA 8 cut(s) 9, 102, 114, 259, 287, 753, 759, 810
TspGWI ACGGA 2 cut(s) 343, 686
TspRI CASTG 2 cut(s) 409, 586
VneI GTGCAC 1 cut(s) 1089
VpaK11BI GGWCC 2 cut(s) 709, 1175
XapI RAATTY 3 cut(s) 103, 664, 997
XspI CTAG 4 cut(s) 12, 207, 899, 1014
Zsp2I ATGCAT 1 cut(s) 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.