Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007612

Physical Location & Seq

Genomic Coordinates Reverse (-)

48148951 .. 48151164

Gene Structure 2214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGCTTGAGTCTTCAATTCTAAGCCCGCCCAGATTCATTTCTGGTTCGAAATCATTGAGTTTCTTGTATTACCATAAGCAGAAAAATTTCCCCACCAAGATTTTGGTGCAAAGTAATCAATACCCATTTCGATTGGTGTCGAATTGCATTGGCACTAGCGATTTTGGGAGGTTCTTAGGTCCAAGATGCGAAGGAGTTGACTTGCTTGCTAATAGAGCTCGTTTGAGAGCTGTAGGTAAAGATAGTGAGAGTTCTAGTGGTACAAATGCTGTTTCGGGTTCGAGTTTTGATTTTGTTAGGGTAATGGTGAAGTGTGGAGTCATTTTAGCAGCTATGGTTTGTGGGGTTTTGGTGTATGGGGCTAGGAGAGCTTTTGCTGTGGAGGGTGTGTGTGAGTTGGCTGAGAAAGAGCCTGAAAATGGTGTCTTCAGATTGCTTCGCAATGATGTGACTCGGTTCTTGTCAACCGTACTTATTGGCACAACTGTTGTCAATATTAGAGCAACTGCTTTAGTTACAGAGACTGTAACAGTGATATTTGGTGAAGCTGGTGTTTGTGAATCAACTGGAGTAATGACTGTTCTTATTTTGCCCCTCACTGAAGTAACGCCCAAAAGTGTTTCTGTTCACAATCCCACAGAAGTTGCTAGGTTTGTGGTTAGGCCGGTGGCTTGGCTTTCATTGGTACTATATCCTGTCGGAAGAGTTGGTACATACCTATCAATGGGGATGCTGAAAATTCTAGGGTTGAAAGGAAGAAGGTTTTCTTTTGAATACTCAAGTTTGAATTATCCTCAACTTCTATTTTATTTGTATTTATTTTCTTGTTGGTTTTCAATCATTGAACCATATGCTACTGAAGAGGAGTTAAAACTAATGTTGCGAGCGGCAGAGTTAAGTGGGGCAATAGAGGAGGAAGAACAGGATTACTTGCAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

314

Amino Acids

34.78

Weight (kDa)

8.11

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	139 - 254	1.7e-24	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007612)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55930 AT1G55930 AT3G13070
malus_domestica	MD03G1188400.v1.1 MD11G1204000.v1.1
prunus_persica	Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1 Prupe.4G235000_v2.0.a1
pyrus_communis	pycom03g14090 pycom11g17690 pycom11g17700
rosa_chinensis	RchiOBHm_Chr1g0355491 RchiOBHm_Chr2g0115171 RchiOBHm_Chr5g0043101
rosa_laevigata	RLG00000031847
rosa_multiflora	Rmu_sc0001714.1_g000010 Rmu_sc0002079.1_g000010 Rmu_sc0008148.1_g000026
rosa_roxburghii	Rroxscaffold_1G00037630 Rroxscaffold_1G00037750
rosa_samantha	Rh2CG257200 Rh5BG295700
rosa_wichuraiana	Rw2G047580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	890
AciI	CCGC	2 cut(s)	29, 890
AcsI	RAATTY	2 cut(s)	88, 741
AcuI	CTGAAG	3 cut(s)	415, 624, 882
AfaI	GTAC	4 cut(s)	265, 474, 690, 715
AfiI	CCNNNNNNNGG	2 cut(s)	422, 727
AgsI	TTSAA	6 cut(s)	18, 754, 776, 790, 840, 848
AluBI	AGCT	5 cut(s)	221, 233, 335, 374, 551
AluI	AGCT	5 cut(s)	221, 233, 335, 374, 551
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	518
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	1 cut(s)	665
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	2 cut(s)	88, 741
Asp700I	GAANNNNTTC	2 cut(s)	89, 766
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	322, 557
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	697, 729
BbsI	GAAGAC	2 cut(s)	6, 421
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	5 cut(s)	159, 258, 366, 651, 746
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	333, 891
BlsI	GCNGC	2 cut(s)	334, 892
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmsI	GCATC	2 cut(s)	179, 723
BpiI	GAAGAC	2 cut(s)	6, 421
BpmI	CTGGAG	1 cut(s)	591
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	29, 766
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 727
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	1 cut(s)	574
Bse3DI	GCAATG	2 cut(s)	451, 944
BseGI	GGATG	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	422, 727
BseMI	GCAATG	2 cut(s)	451, 944
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	574
BseRI	GAGGAG	2 cut(s)	881, 929
BseXI	GCAGC	1 cut(s)	344
BshFI	GGCC	1 cut(s)	667
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	668
BslI	CCNNNNNNNGG	2 cut(s)	422, 727
BsmAI	GTCTC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	667
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	29, 890
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	1 cut(s)	397
BspT104I	TTCGAA	1 cut(s)	50
BsrBI	CCGCTC	1 cut(s)	890
BsrDI	GCAATG	2 cut(s)	451, 944
BsrFI	RCCGGY	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	574
BssAI	RCCGGY	1 cut(s)	667
Bst4CI	ACNGT	5 cut(s)	472, 490, 529, 535, 583
Bst6I	CTCTTC	2 cut(s)	700, 858
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	3 cut(s)	29, 210, 888
BstDEI	CTNAG	3 cut(s)	23, 178, 405
BstF5I	GGATG	1 cut(s)	738
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 371
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	344
BstV2I	GAAGAC	2 cut(s)	6, 421
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	667
BtsCI	GGATG	1 cut(s)	738
BtsIMutI	CAGTG	2 cut(s)	540, 600
Cac8I	GCNNGC	3 cut(s)	29, 210, 888
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	4 cut(s)	264, 473, 689, 714
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviQI	GTAC	4 cut(s)	264, 473, 689, 714
DdeI	CTNAG	3 cut(s)	23, 178, 405
Eam1104I	CTCTTC	2 cut(s)	700, 858
EarI	CTCTTC	2 cut(s)	700, 858
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	182
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	3 cut(s)	415, 624, 882
EcoICRI	GAGCTC	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	223
FaiI	YATR	7 cut(s)	78, 338, 360, 694, 718, 853, 855
FalI	AAGNNNNNCTT	2 cut(s)	754, 786
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	853
Fnu4HI	GCNGC	2 cut(s)	333, 891
FokI	GGATG	1 cut(s)	745
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	333, 891
FspBI	CTAG	5 cut(s)	159, 258, 366, 651, 746
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	2 cut(s)	333, 891
GsuI	CTGGAG	1 cut(s)	591
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	667
HapII	CCGG	1 cut(s)	668
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	202, 468
HindII	GTYRAC	2 cut(s)	202, 468
HinfI	GANTC	5 cut(s)	11, 36, 321, 454, 563
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	2 cut(s)	322, 557
Hpy166II	GTNNAC	3 cut(s)	202, 468, 631
Hpy188I	TCNGA	2 cut(s)	434, 704
Hpy8I	GTNNAC	3 cut(s)	202, 468, 631
HpyAV	CCTTC	2 cut(s)	188, 756
HpyCH4III	ACNGT	5 cut(s)	472, 490, 529, 535, 583
HpyCH4V	TGCA	3 cut(s)	112, 150, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 371
HpyF3I	CTNAG	3 cut(s)	23, 178, 405
HspAI	GCGC	1 cut(s)	5
LpnPI	CCDG	8 cut(s)	30, 46, 429, 537, 555, 681, 711, 911
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	2 cut(s)	179, 723
MaeI	CTAG	5 cut(s)	159, 258, 366, 651, 746
MaeIII	GTNAC	4 cut(s)	451, 517, 529, 607
MbiI	CCGCTC	1 cut(s)	890
MboII	GAAGA	6 cut(s)	6, 421, 717, 771, 875, 932
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	5 cut(s)	18, 88, 145, 741, 790
MlyI	GAGTC	3 cut(s)	20, 330, 448
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	7 cut(s)	165, 379, 608, 807, 859, 907, 910
MroXI	GAANNNNTTC	2 cut(s)	89, 766
MseI	TTAA	2 cut(s)	872, 899
MspI	CCGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	2 cut(s)	218, 371
NdeI	CATATG	1 cut(s)	853
NmuCI	GTSAC	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	50
PdmI	GAANNNNTTC	2 cut(s)	89, 766
PfeI	GAWTC	2 cut(s)	36, 563
PkrI	GCNGC	2 cut(s)	334, 892
PleI	GAGTC	3 cut(s)	19, 329, 448
PpsI	GAGTC	3 cut(s)	19, 329, 448
Psp124BI	GAGCTC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	182
PsrI	GAACNNNNNNTAC	2 cut(s)	567, 599
PstNI	CAGNNNCTG	1 cut(s)	527
RsaI	GTAC	4 cut(s)	265, 474, 690, 715
RsaNI	GTAC	4 cut(s)	264, 473, 689, 714
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	872, 899
SatI	GCNGC	2 cut(s)	333, 891
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	3 cut(s)	20, 330, 448
SduI	GDGCHC	1 cut(s)	223
SfaNI	GCATC	2 cut(s)	179, 723
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	8, 781
SmoI	CTYRAG	2 cut(s)	8, 781
Sse9I	AATT	5 cut(s)	18, 88, 145, 741, 790
SsiI	CCGC	2 cut(s)	29, 890
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	5 cut(s)	159, 258, 366, 651, 746
SstI	GAGCTC	1 cut(s)	223
TaaI	ACNGT	5 cut(s)	472, 490, 529, 535, 583
TaqI	TCGA	4 cut(s)	50, 133, 143, 284
TasI	AATT	5 cut(s)	18, 88, 145, 741, 790
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	2 cut(s)	36, 563
Tru1I	TTAA	2 cut(s)	872, 899
Tru9I	TTAA	2 cut(s)	872, 899
TscAI	CASTG	2 cut(s)	540, 607
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	2 cut(s)	28, 672
TspRI	CASTG	2 cut(s)	540, 607
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	2 cut(s)	88, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmnI	GAANNNNTTC	2 cut(s)	89, 766
XspI	CTAG	5 cut(s)	159, 258, 366, 651, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.