Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009823

Physical Location & Seq

Genomic Coordinates Reverse (-)

51148206 .. 51150497

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGACGTCAAACGCCGCAGAAAACAAGCCAAGACTAGCAGCAGTTCCTTCTCGGAAGAGGTAAGCAGCATTGAGTGGGAGTTCATAAACATGTCGGAACAAGAAGAAGACCTCATTTGTAGAATGTACAAGCTCGTCGGAGACAGGTGGGGACTTATAGCCGGGAGGCTTCCGGGCCGGAAAGCAGAAGAAATAGAGAGGTTCTGGTTAATGAGACACGGAGAAGTATTTGCAAGTAGAAGAAGAACAGAGCAGGAGAAGTACCAGCAACCCCAGCAGCTTAGTAATAGCAATAACATGAATAAGTCTACTAAGAATAGCAGGAGATACAATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

112

Amino Acids

13.41

Weight (kDa)

9.77

Isoelectric Point (pI)

99.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	31 - 71	5.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01380 AT1G01380 AT1G01380 AT2G46410 AT4G01060 AT4G01060 AT4G01060
fragaria_vesca	FvH4_7g16170
malus_domestica	MD07G1147100.v1.1
prunus_persica	Prupe.2G185200_v2.0.a1
pyrus_communis	pycom01g10670
rosa_chinensis	RchiOBHm_Chr1g0359121
rosa_laevigata	RLG00000027899
rosa_multiflora	Rmu_sc0008475.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297320
rosa_rugosa	Rorug01G0267900
rosa_samantha	Rh1AG281600 Rh1BG248400 Rh1CG265900 Rh1DG277100
rosa_wichuraiana	Rw1G025030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccI	GTMKAC	1 cut(s)	308
AciI	CCGC	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	2 cut(s)	128, 263
AflIII	ACRYGT	1 cut(s)	90
AluBI	AGCT	2 cut(s)	133, 280
AluI	AGCT	2 cut(s)	133, 280
Alw26I	GTCTC	2 cut(s)	135, 208
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	3 cut(s)	39, 66, 277
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	2 cut(s)	163, 174
BbsI	GAAGAC	1 cut(s)	114
BbvI	GCAGC	3 cut(s)	51, 78, 289
BcnI	CCSGG	2 cut(s)	163, 174
BcoDI	GTCTC	2 cut(s)	135, 208
BfaI	CTAG	1 cut(s)	36
BisI	GCNGC	4 cut(s)	16, 40, 67, 278
BlsI	GCNGC	4 cut(s)	17, 41, 68, 279
Bme1390I	CCNGG	2 cut(s)	163, 174
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	163, 174
BpiI	GAAGAC	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	163, 174
BsaHI	GRCGYC	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	51, 78, 289
BseYI	CCCAGC	1 cut(s)	273
BshFI	GGCC	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	162, 173, 178
BslFI	GGGAC	1 cut(s)	165
BsmAI	GTCTC	2 cut(s)	135, 208
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	177
Bsp1407I	TGTACA	1 cut(s)	126
BspACI	CCGC	1 cut(s)	16
BspANI	GGCC	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	281, 312
BstMAI	GTCTC	2 cut(s)	135, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	161, 172
BstV1I	GCAGC	3 cut(s)	51, 78, 289
BstV2I	GAAGAC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	127, 262
CviAII	CATG	2 cut(s)	91, 298
CviJI	RGCY	6 cut(s)	29, 133, 161, 169, 177, 280
CviKI_1	RGCY	6 cut(s)	29, 133, 161, 169, 177, 280
CviQI	GTAC	2 cut(s)	127, 262
DdeI	CTNAG	2 cut(s)	281, 312
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	94, 301
FaiI	YATR	4 cut(s)	86, 92, 158, 299
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	2 cut(s)	90, 297
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	4 cut(s)	16, 40, 67, 278
Fsp4HI	GCNGC	4 cut(s)	16, 40, 67, 278
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	4 cut(s)	16, 40, 67, 278
GsaI	CCCAGC	1 cut(s)	277
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	3 cut(s)	162, 173, 178
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	94, 301
HpaII	CCGG	3 cut(s)	162, 173, 178
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	3 cut(s)	55, 97, 140
Hpy188III	TCNNGA	1 cut(s)	336
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	2 cut(s)	281, 312
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	94, 301
LpnPI	CCDG	9 cut(s)	130, 175, 186, 190, 191, 239, 278, 287, 307
Lsp1109I	GCAGC	3 cut(s)	51, 78, 289
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	6
MboII	GAAGA	6 cut(s)	68, 116, 119, 200, 252, 255
MluCI	AATT	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	75, 118
MnlI	CCTC	4 cut(s)	52, 122, 159, 192
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	3 cut(s)	162, 173, 178
MspR9I	CCNGG	2 cut(s)	163, 174
MwoI	GCNNNNNNNGC	1 cut(s)	274
NciI	CCSGG	2 cut(s)	163, 174
NlaIII	CATG	2 cut(s)	94, 301
NspI	RCATGY	1 cut(s)	94
PciI	ACATGT	1 cut(s)	90
PkrI	GCNGC	4 cut(s)	17, 41, 68, 279
PscI	ACATGT	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	175
RsaI	GTAC	2 cut(s)	128, 263
RsaNI	GTAC	2 cut(s)	127, 262
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	4 cut(s)	16, 40, 67, 278
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	163, 174
SetI	ASST	7 cut(s)	9, 63, 114, 135, 149, 203, 282
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	161, 172
TaiI	ACGT	1 cut(s)	9
TasI	AATT	1 cut(s)	331
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseI	GCWGC	3 cut(s)	39, 66, 277
TspDTI	ATGAA	2 cut(s)	73, 314
TspGWI	ACGGA	1 cut(s)	234
XceI	RCATGY	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	308
XspI	CTAG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.