Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010499

Physical Location & Seq

Genomic Coordinates Reverse (-)

51305079 .. 51310135

Gene Structure 5057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGAAAACGACGTCGCTTTCGTCCACTATTATGCCCGTTAAGCTCCTCCTCAACAACCCTTCTCTCCCAGTAACCCGCTTCCTCTCCATGAAATTCGGACCCTCCATTTCCGCCCCTCGACCCGTACCCGCTTTCTCCCGGGTCTTCCCGCTCCGCCTCAGGTACCTCGCCCTCGGCTCCCAGCGCACATTCTCCACCCGCCGAACCGGGTCGGGCTCCCAATTCTTGCGCGGCTACGAGCGAAAGGCGGCGGTCGGGGGATCCAAGAGCCTGGTCGACCACGAGGCGGAGCTGAGTGACTGGGTCAGCGAGTTGAGGACCGACACGACCCGCGGTGGCGGTGGCCGGGGAGAGGAATCGGACGGTGGTGGTCGGAGAGGTAGTCGGGTTAGAGATAGGGGCGGCGATAGAGAGCCTTATCCGGCGAAGCGGAGCAGGAGAGATAGCGGCGCCGACGAGTTTGGTGAGTCGAGAACTCGGGGAGGGTTTCGGTCTTTTCCGGGAAGTTCACGGATGAGTAAAAGGGATGATCATGATGATAAAGAAGGTAGGTCATTTCCGCCGAGAAGCAATCGGGGGAGTTCGAGCTCGAATGACCGGTTTGGTGAGTCGAATCGGAGACGATTTCCGAGCTCGAATCCGTCGGCATTTACTAGAAATCCACGGATGGATAGAAGGTTTGATAACAAATTTGGGGACAATGCTGTGAAGGAAGATGGGTTTCCGGGGAGGAGAGGTCCGAATTTCAGAGGGAATTCGAATGCGAGTTCAAGTTCTTTGAGTAAGAGAGGAGGGAGAGAGGTGGATTCGGGTTTCAGACGAGGCGGCGAGGGGTTGAGGAAGGGTGGGAGAGATTCGAGGAAGGAAAAGGAAATGCTTGTGGTGGATGATAGTGATGAGGATGAGGAGGTGAATGAGCTTGGTGTTGGCATTGCGGATTTGCTTACCGAGGAAGATAGTGATAGTGCTGCTTCGGATGAGGATGATGAGTACGAAGGATTGAAAGATAAGAGTTCAGCTGCATTGTTTGGTTCGGATAAGGAAGTGGTGAGTCAGAAGGCTGTGCCGAAAAGTTCAGCGGGAGACTCTGACTCTTATTTGAGCGAGTCAAGGTTTGATCAGTGTTCGGTCTCGCCACTGTCCTTGAAGGGAATCAAGGATGCGGGATATGAGAACATGACTGTGGTACAAGAGGCTACTCTTCCCATCATACTCAAAGGCAAGGATGTTCTAGCCAAGGCTAAAACCGGAACTGGAAAAACTGTTGCATTCTTGCTTCCATCAATTGAAGTTGTTGTAAAATCACCTCCTATTGGACGCGATCATAAGAGACCCCCAATTTCTGTACTTGTAATATGCCCAACCCGAGAGCTGGCGAGTCAAGCTGCAGCAGAAGCCAATAAATTGTTGAAGTATCATCCTTCTATTGGTGTTCAAGTTGTGATAGGAGGTACAAGACTTGCTCTAGAACAGAAACGCATGCAAGCAAACCCTTGCCAGATTCTTGTCGCTACACCGGGAAGGCTCAAAGATCACATTGAGAATACCGCAGGTTTCGCAACTAGGCTGATGGGTGTCAAAGTCCTCATTCTTGATGAAGCTGATCATCTACTGGATATGGGGTTCCGTAAAGACATTGAAAGGATTATAGCAGCTGTTCCAAAACAGCGACAGACACTACTGTTCTCTGCCACCGTTCCAGAAGAGGTCCGTCAAATCTGTCATATCGCTTTGAAAAGAGATCATGAATTTATTAACACGGTTCAGGAAGGCAGTGAAGAGACACATGCACAGGTCAGACAAACCCATTTGGTTGCTCCTTTGGACAAACACTTTTCCTTTGTATATAGTCTTCTTAAAGAGCACATTGCTGACGATCCTGACTATAAGGTTCTCGTATTCTGCACTACTGCAATGGTCACACGACTGGTTGCTGACCTTCTTGGTGAGCTGAACTTGAATGTTAGAGAAATCCACTCCAGAAAGCCACAGAGTTATAGAACTAGGGTTTCCGATGAATTTCGGAAATCAAAGGGTCTTATCCTTGTGACTTCTGATGTATCTGCACGAGGGGTTGATTATCCAGACGTTACTCTAGTCATACAGGTGGGCATTCCAGCTGATAGACAACAGTATATTCACCGACTTGGTAGAACCGGCCGTAAAGGCAAAGAAGGGCAAGGAATATTGCTACTGGCTCCTTGGGAGGAATTTTTCTTATCCACTATTAAAGATTTGCCAATGACCAAGGCTCCTGTACCTTTAGTTGATCCAGATACGACCAAGAAGGTAGCACGAGCTCTATCCCAAGTGGACATGAAGAACAAAGAAGCAGCATACCAAGCGTGGCTGGGTTATTACAATTCAAATAAGAAAATAGGGCGTGATAAGCATAGGCTTGTGGAGCTTGCTAATGAGTTTAGCCGAAGCATGGGATTGGACAACCCTCCAGCCATTGCCAAGCTTGTTCTTGGTAAAATGGGTCTTAAGAATGTCCCTGGACTGCGTTCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

838

Amino Acids

92.46

Weight (kDa)

9.55

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	395 - 572	2.1e-45	DEAD/DEAH box helicase
ResIII	PF04851	406 - 567	5.9e-08	Type III restriction enzyme, res subunit
Helicase_C	PF00271	618 - 723	3e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63630 AT5G63630
fragaria_vesca	FvH4_7g16280
malus_domestica	MD01G1079300.v1.1 MD07G1148200.v1.1
prunus_persica	Prupe.2G186500_v2.0.a1
pyrus_communis	pycom01g10760 pycom07g14720
rosa_chinensis	RchiOBHm_Chr1g0359291
rosa_laevigata	RLG00000027883
rosa_multiflora	Rmu_co8196408.1_g000001 Rmu_ssc0000135.1_g000038
rosa_roxburghii	Rroxscaffold_4G00297140 Rroxscaffold_5G00348520
rosa_rugosa	Rorug01G0269200
rosa_samantha	Rh1AG283200 Rh1BG249400 Rh1CG267300 Rh1DG278300 Rh2AG248100
rosa_wichuraiana	Rw1G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	1541
Acc65I	GGTACC	1 cut(s)	162
AccB1I	GGYRCC	2 cut(s)	162, 449
AccBSI	CCGCTC	1 cut(s)	151
AccI	GTMKAC	1 cut(s)	276
AccII	CGCG	3 cut(s)	231, 333, 1320
AclWI	GGATC	4 cut(s)	255, 268, 1871, 2264
AcoI	YGGCCR	2 cut(s)	343, 2158
AcsI	RAATTY	7 cut(s)	92, 689, 742, 754, 1748, 2018, 2210
AcyI	GRCGYC	2 cut(s)	11, 450
AfaI	GTAC	7 cut(s)	126, 164, 992, 1188, 1347, 1453, 2259
AfiI	CCNNNNNNNGG	6 cut(s)	286, 352, 1313, 1372, 1427, 2431
AflII	CTTAAG	1 cut(s)	2486
AgeI	ACCGGT	1 cut(s)	597
AjnI	CCWGG	2 cut(s)	270, 2497
AloI	GAACNNNNNNTCC	2 cut(s)	1607, 1639
Alw21I	GWGCWC	4 cut(s)	590, 635, 1866, 2302
Alw26I	GTCTC	5 cut(s)	613, 1077, 1135, 1324, 1775
AlwI	GGATC	4 cut(s)	255, 268, 1871, 2264
Ama87I	CYCGRG	3 cut(s)	138, 477, 1365
AoxI	GGCC	2 cut(s)	343, 2158
ApeKI	GCWGC	6 cut(s)	968, 1019, 1385, 1388, 1652, 2333
ApoI	RAATTY	7 cut(s)	92, 689, 742, 754, 1748, 2018, 2210
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AsiGI	ACCGGT	1 cut(s)	597
Asp718I	GGTACC	1 cut(s)	162
AspLEI	GCGC	3 cut(s)	186, 231, 452
AspS9I	GGNCC	4 cut(s)	98, 318, 737, 1708
AsuC2I	CCSGG	7 cut(s)	139, 140, 208, 347, 501, 726, 1518
AsuHPI	GGTGA	7 cut(s)	476, 617, 922, 1060, 1296, 1958, 2132
AsuII	TTCGAA	1 cut(s)	758
AvaI	CYCGRG	3 cut(s)	138, 477, 1365
AvaII	GGWCC	4 cut(s)	98, 318, 737, 1708
AxyI	CCTNAGG	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	260
BanI	GGYRCC	2 cut(s)	162, 449
BanII	GRGCYC	4 cut(s)	218, 590, 635, 2302
BarI	GAAGNNNNNNTAC	2 cut(s)	1836, 1868
BauI	CACGAG	3 cut(s)	281, 2067, 2295
BbsI	GAAGAC	2 cut(s)	136, 1844
Bbv12I	GWGCWC	4 cut(s)	590, 635, 1866, 2302
BbvI	GCAGC	6 cut(s)	955, 1006, 1372, 1400, 1664, 2345
BccI	CCATC	5 cut(s)	661, 710, 1214, 1288, 1564
BceAI	ACGGC	1 cut(s)	2145
BciT130I	CCWGG	2 cut(s)	272, 2499
BclI	TGATCA	3 cut(s)	529, 1117, 1603
BcnI	CCSGG	7 cut(s)	139, 140, 208, 347, 501, 726, 1518
BcoDI	GTCTC	5 cut(s)	613, 1077, 1135, 1324, 1775
BfaI	CTAG	6 cut(s)	654, 1232, 1466, 1563, 2004, 2096
BfmI	CTRYAG	1 cut(s)	1386
BfoI	RGCGCY	1 cut(s)	453
BfrI	CTTAAG	1 cut(s)	2486
BfuAI	ACCTGC	1 cut(s)	1541
BglI	GCCNNNNNGGC	1 cut(s)	2166
Bme1390I	CCNGG	9 cut(s)	139, 140, 208, 272, 347, 501, 726, 1518, 2499
Bme18I	GGWCC	4 cut(s)	98, 318, 737, 1708
BmeT110I	CYCGRG	3 cut(s)	138, 477, 1365
BmgT120I	GGNCC	4 cut(s)	98, 318, 737, 1708
BmiI	GGNNCC	9 cut(s)	100, 164, 178, 217, 262, 451, 1625, 2199, 2253
BmrFI	CCNGG	9 cut(s)	139, 140, 208, 272, 347, 501, 726, 1518, 2499
BmrI	ACTGGG	2 cut(s)	62, 310
BmsI	GCATC	1 cut(s)	1150
BmuI	ACTGGG	2 cut(s)	62, 310
BpiI	GAAGAC	2 cut(s)	136, 1844
BpmI	CTGGAG	2 cut(s)	1963, 2433
Bpu14I	TTCGAA	1 cut(s)	758
BpuMI	CCSGG	7 cut(s)	139, 140, 208, 347, 501, 726, 1518
BsaHI	GRCGYC	2 cut(s)	11, 450
BsaI	GGTCTC	2 cut(s)	1135, 1324
BsaWI	WCCGGW	2 cut(s)	597, 1247
BsaXI	ACNNNNNCTCC	6 cut(s)	367, 397, 721, 751, 2236, 2266
Bsc4I	CCNNNNNNNGG	6 cut(s)	286, 352, 1313, 1372, 1427, 2431
Bse118I	RCCGGY	2 cut(s)	597, 2156
Bse1I	ACTGG	6 cut(s)	68, 305, 1258, 1617, 1932, 2199
Bse21I	CCTNAGG	1 cut(s)	158
Bse3DI	GCAATG	4 cut(s)	930, 1866, 1920, 2454
BseBI	CCWGG	2 cut(s)	272, 2499
BseLI	CCNNNNNNNGG	6 cut(s)	286, 352, 1313, 1372, 1427, 2431
BseMI	GCAATG	4 cut(s)	930, 1866, 1920, 2454
BseMII	CTCAG	2 cut(s)	172, 284
BseNI	ACTGG	6 cut(s)	68, 305, 1258, 1617, 1932, 2199
BseRI	GAGGAG	5 cut(s)	35, 38, 745, 804, 920
BseX3I	CGGCCG	1 cut(s)	2158
BseXI	GCAGC	6 cut(s)	955, 1006, 1372, 1400, 1664, 2345
BseYI	CCCAGC	2 cut(s)	180, 2350
BsgI	GTGCAG	2 cut(s)	1888, 2049
Bsh1236I	CGCG	3 cut(s)	231, 333, 1320
Bsh1285I	CGRYCG	2 cut(s)	255, 2161
BshFI	GGCC	2 cut(s)	345, 2160
BshNI	GGYRCC	2 cut(s)	162, 449
BshTI	ACCGGT	1 cut(s)	597
BsiEI	CGRYCG	2 cut(s)	255, 2161
BsiHKAI	GWGCWC	4 cut(s)	590, 635, 1866, 2302
BsiHKCI	CYCGRG	3 cut(s)	138, 477, 1365
BslFI	GGGAC	2 cut(s)	710, 2480
BslI	CCNNNNNNNGG	6 cut(s)	286, 352, 1313, 1372, 1427, 2431
BsmAI	GTCTC	5 cut(s)	613, 1077, 1135, 1324, 1775
BsmBI	CGTCTC	1 cut(s)	613
BsmFI	GGGAC	2 cut(s)	710, 2480
BsmI	GAATGC	3 cut(s)	766, 1268, 2112
BsnI	GGCC	2 cut(s)	345, 2160
Bso31I	GGTCTC	2 cut(s)	1135, 1324
BsoBI	CYCGRG	3 cut(s)	138, 477, 1365
Bsp119I	TTCGAA	1 cut(s)	758
Bsp1286I	GDGCHC	5 cut(s)	218, 590, 635, 1866, 2302
Bsp143I	GATC	9 cut(s)	260, 529, 1117, 1321, 1531, 1603, 1741, 1876, 2269
BspANI	GGCC	2 cut(s)	345, 2160
BspCNI	CTCAG	2 cut(s)	171, 285
BspFNI	CGCG	3 cut(s)	231, 333, 1320
BspHI	TCATGA	2 cut(s)	532, 1744
BspLI	GGNNCC	9 cut(s)	100, 164, 178, 217, 262, 451, 1625, 2199, 2253
BspMAI	CTGCAG	1 cut(s)	1390
BspMI	ACCTGC	1 cut(s)	1541
BspPI	GGATC	4 cut(s)	255, 268, 1871, 2264
BspT104I	TTCGAA	1 cut(s)	758
BspT107I	GGYRCC	2 cut(s)	162, 449
BspTI	CTTAAG	1 cut(s)	2486
BspTNI	GGTCTC	2 cut(s)	1135, 1324
BsrBI	CCGCTC	1 cut(s)	151
BsrDI	GCAATG	4 cut(s)	930, 1866, 1920, 2454
BsrFI	RCCGGY	2 cut(s)	597, 2156
BsrI	ACTGG	6 cut(s)	68, 305, 1258, 1617, 1932, 2199
BssAI	RCCGGY	2 cut(s)	597, 2156
BssMI	GATC	9 cut(s)	260, 529, 1117, 1321, 1531, 1603, 1741, 1876, 2269
BssNI	GRCGYC	2 cut(s)	11, 450
BssSI	CACGAG	3 cut(s)	281, 2067, 2295
BssT1I	CCWWGG	3 cut(s)	1236, 2201, 2247
Bst2BI	CACGAG	3 cut(s)	281, 2067, 2295
Bst2UI	CCWGG	2 cut(s)	272, 2499
Bst4CI	ACNGT	8 cut(s)	365, 1140, 1183, 1264, 1683, 1696, 1762, 2133
Bst6I	CTCTTC	3 cut(s)	1206, 1698, 1773
BstACI	GRCGYC	2 cut(s)	11, 450
BstAFI	CTTAAG	1 cut(s)	2486
BstBI	TTCGAA	1 cut(s)	758
BstC8I	GCNNGC	4 cut(s)	1374, 1481, 1485, 2409
BstDEI	CTNAG	2 cut(s)	158, 293
BstDSI	CCRYGG	2 cut(s)	331, 662
BstFNI	CGCG	3 cut(s)	231, 333, 1320
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	3 cut(s)	186, 231, 452
BstKTI	GATC	9 cut(s)	263, 532, 1120, 1324, 1534, 1606, 1744, 1879, 2272
BstMAI	GTCTC	5 cut(s)	613, 1077, 1135, 1324, 1775
BstMBI	GATC	9 cut(s)	260, 529, 1117, 1321, 1531, 1603, 1741, 1876, 2269
BstMCI	CGRYCG	2 cut(s)	255, 2161
BstMWI	GCNNNNNNNGC	9 cut(s)	40, 183, 1382, 1394, 1556, 2166, 2342, 2389, 2404
BstNI	CCWGG	2 cut(s)	272, 2499
BstNSI	RCATGY	2 cut(s)	1483, 1790
BstSCI	CCNGG	9 cut(s)	137, 138, 206, 270, 345, 499, 724, 1516, 2497
BstSFI	CTRYAG	1 cut(s)	1386
BstUI	CGCG	3 cut(s)	231, 333, 1320
BstV1I	GCAGC	6 cut(s)	955, 1006, 1372, 1400, 1664, 2345
BstV2I	GAAGAC	2 cut(s)	136, 1844
BstX2I	RGATCY	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	2158
Bsu36I	CCTNAGG	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	345, 2160
BtgI	CCRYGG	2 cut(s)	331, 662
BtsI	GCAGTG	1 cut(s)	1780
BtsIMutI	CAGTG	3 cut(s)	1127, 1136, 1780
BveI	ACCTGC	1 cut(s)	1541
Cac8I	GCNNGC	4 cut(s)	1374, 1481, 1485, 2409
CciI	TCATGA	2 cut(s)	532, 1744
CfoI	GCGC	3 cut(s)	186, 231, 452
Cfr10I	RCCGGY	2 cut(s)	597, 2156
Cfr13I	GGNCC	4 cut(s)	98, 318, 737, 1708
Cfr42I	CCGCGG	1 cut(s)	334
Cfr9I	CCCGGG	1 cut(s)	138
CseI	GACGC	1 cut(s)	1326
Csp6I	GTAC	7 cut(s)	125, 163, 991, 1187, 1346, 1452, 2258
CspAI	ACCGGT	1 cut(s)	597
CspCI	CAANNNNNGTGG	2 cut(s)	1125, 1160
CviAII	CATG	8 cut(s)	88, 533, 1177, 1480, 1745, 1787, 2317, 2431
CviQI	GTAC	7 cut(s)	125, 163, 991, 1187, 1346, 1452, 2258
DdeI	CTNAG	2 cut(s)	158, 293
DinI	GGCGCC	1 cut(s)	451
DpnI	GATC	9 cut(s)	262, 531, 1119, 1323, 1533, 1605, 1743, 1878, 2271
DpnII	GATC	9 cut(s)	260, 529, 1117, 1321, 1531, 1603, 1741, 1876, 2269
EaeI	YGGCCR	2 cut(s)	343, 2158
EagI	CGGCCG	1 cut(s)	2158
Eam1104I	CTCTTC	3 cut(s)	1206, 1698, 1773
EarI	CTCTTC	3 cut(s)	1206, 1698, 1773
EciI	GGCGGA	4 cut(s)	100, 143, 302, 549
Ecl136II	GAGCTC	3 cut(s)	588, 633, 2300
EclXI	CGGCCG	1 cut(s)	2158
Eco130I	CCWWGG	3 cut(s)	1236, 2201, 2247
Eco24I	GRGCYC	4 cut(s)	218, 590, 635, 2302
Eco31I	GGTCTC	2 cut(s)	1135, 1324
Eco47I	GGWCC	4 cut(s)	98, 318, 737, 1708
Eco52I	CGGCCG	1 cut(s)	2158
Eco53kI	GAGCTC	3 cut(s)	588, 633, 2300
Eco81I	CCTNAGG	1 cut(s)	158
Eco88I	CYCGRG	3 cut(s)	138, 477, 1365
EcoICRI	GAGCTC	3 cut(s)	588, 633, 2300
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	2 cut(s)	270, 2497
EcoT14I	CCWWGG	3 cut(s)	1236, 2201, 2247
EcoT38I	GRGCYC	4 cut(s)	218, 590, 635, 2302
EgeI	GGCGCC	1 cut(s)	451
EheI	GGCGCC	1 cut(s)	451
ErhI	CCWWGG	3 cut(s)	1236, 2201, 2247
Esp3I	CGTCTC	1 cut(s)	613
FaeI	CATG	8 cut(s)	91, 536, 1180, 1483, 1748, 1790, 2320, 2434
FaqI	GGGAC	2 cut(s)	710, 2480
FatI	CATG	8 cut(s)	87, 532, 1176, 1479, 1744, 1786, 2316, 2430
FauI	CCCGC	7 cut(s)	83, 136, 156, 206, 338, 1072, 1156
FbaI	TGATCA	3 cut(s)	529, 1117, 1603
FblI	GTMKAC	1 cut(s)	276
FriOI	GRGCYC	4 cut(s)	218, 590, 635, 2302
FspBI	CTAG	6 cut(s)	654, 1232, 1466, 1563, 2004, 2096
GlaI	GCGC	3 cut(s)	185, 230, 451
GsaI	CCCAGC	2 cut(s)	184, 2354
GsuI	CTGGAG	2 cut(s)	1963, 2433
HaeII	RGCGCY	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	345, 2160
HgaI	GACGC	1 cut(s)	1326
HhaI	GCGC	3 cut(s)	186, 231, 452
Hin1I	GRCGYC	2 cut(s)	11, 450
Hin1II	CATG	8 cut(s)	91, 536, 1180, 1483, 1748, 1790, 2320, 2434
Hin6I	GCGC	3 cut(s)	184, 229, 450
HinP1I	GCGC	3 cut(s)	184, 229, 450
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	2462
HphI	GGTGA	7 cut(s)	476, 617, 922, 1060, 1296, 1958, 2132
Hpy166II	GTNNAC	4 cut(s)	24, 277, 509, 2314
Hpy8I	GTNNAC	4 cut(s)	24, 277, 509, 2314
Hpy99I	CGWCG	4 cut(s)	13, 16, 458, 646
HpyCH4III	ACNGT	8 cut(s)	365, 1140, 1183, 1264, 1683, 1696, 1762, 2133
HpyCH4IV	ACGT	2 cut(s)	11, 2088
HpyCH4V	TGCA	8 cut(s)	1022, 1268, 1388, 1483, 1790, 1905, 1913, 2066
HpyF10VI	GCNNNNNNNGC	9 cut(s)	40, 183, 1382, 1394, 1556, 2166, 2342, 2389, 2404
HpyF3I	CTNAG	2 cut(s)	158, 293
HpySE526I	ACGT	2 cut(s)	11, 2088
Hsp92I	GRCGYC	2 cut(s)	11, 450
Hsp92II	CATG	8 cut(s)	91, 536, 1180, 1483, 1748, 1790, 2320, 2434
HspAI	GCGC	3 cut(s)	184, 229, 450
KasI	GGCGCC	1 cut(s)	449
KpnI	GGTACC	1 cut(s)	166
Ksp22I	TGATCA	3 cut(s)	529, 1117, 1603
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	9 cut(s)	260, 529, 1117, 1321, 1531, 1603, 1741, 1876, 2269
Lsp1109I	GCAGC	6 cut(s)	955, 1006, 1372, 1400, 1664, 2345
LweI	GCATC	1 cut(s)	1150
MaeI	CTAG	6 cut(s)	654, 1232, 1466, 1563, 2004, 2096
MaeII	ACGT	2 cut(s)	11, 2088
MaeIII	GTNAC	5 cut(s)	70, 296, 1918, 2047, 2089
MalI	GATC	9 cut(s)	262, 531, 1119, 1323, 1533, 1605, 1743, 1878, 2271
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	9 cut(s)	260, 529, 1117, 1321, 1531, 1603, 1741, 1876, 2269
MboII	GAAGA	8 cut(s)	136, 725, 965, 1193, 1715, 1790, 1844, 2332
MfeI	CAATTG	1 cut(s)	1284
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	5 cut(s)	218, 590, 635, 1866, 2302
Mly113I	GGCGCC	1 cut(s)	450
MlyI	GAGTC	7 cut(s)	476, 617, 1060, 1079, 1085, 1115, 1387
MmeI	TCCRAC	1 cut(s)	353
MseI	TTAA	5 cut(s)	39, 1755, 1857, 2229, 2487
MslI	CAYNNNNRTG	3 cut(s)	29, 1181, 2105
MspA1I	CMGCKG	5 cut(s)	333, 1019, 1079, 1655, 2120
MspCI	CTTAAG	1 cut(s)	2486
MspR9I	CCNGG	9 cut(s)	139, 140, 208, 272, 347, 501, 726, 1518, 2499
MunI	CAATTG	1 cut(s)	1284
Mva1269I	GAATGC	3 cut(s)	766, 1268, 2112
MvaI	CCWGG	2 cut(s)	272, 2499
MvnI	CGCG	3 cut(s)	231, 333, 1320
MwoI	GCNNNNNNNGC	9 cut(s)	40, 183, 1382, 1394, 1556, 2166, 2342, 2389, 2404
NarI	GGCGCC	1 cut(s)	450
NciI	CCSGG	7 cut(s)	139, 140, 208, 347, 501, 726, 1518
NdeII	GATC	9 cut(s)	260, 529, 1117, 1321, 1531, 1603, 1741, 1876, 2269
NlaIII	CATG	8 cut(s)	91, 536, 1180, 1483, 1748, 1790, 2320, 2434
NlaIV	GGNNCC	9 cut(s)	100, 164, 178, 217, 262, 451, 1625, 2199, 2253
NmeAIII	GCCGAG	2 cut(s)	153, 588
NmuCI	GTSAC	3 cut(s)	296, 1918, 2047
NspI	RCATGY	2 cut(s)	1483, 1790
NspV	TTCGAA	1 cut(s)	758
PaeI	GCATGC	1 cut(s)	1483
PagI	TCATGA	2 cut(s)	532, 1744
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	3 cut(s)	766, 1268, 2112
PfeI	GAWTC	7 cut(s)	356, 613, 637, 806, 854, 1152, 1501
PflFI	GACNNNGTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	499
PinAI	ACCGGT	1 cut(s)	597
PleI	GAGTC	7 cut(s)	475, 616, 1059, 1079, 1085, 1114, 1386
PluTI	GGCGCC	1 cut(s)	453
PpsI	GAGTC	7 cut(s)	475, 616, 1059, 1079, 1085, 1114, 1386
Psp124BI	GAGCTC	3 cut(s)	590, 635, 2302
Psp6I	CCWGG	2 cut(s)	270, 2497
PspFI	CCCAGC	2 cut(s)	180, 2350
PspGI	CCWGG	2 cut(s)	270, 2497
PspN4I	GGNNCC	9 cut(s)	100, 164, 178, 217, 262, 451, 1625, 2199, 2253
PspPI	GGNCC	4 cut(s)	98, 318, 737, 1708
PstI	CTGCAG	1 cut(s)	1390
PsuI	RGATCY	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	302
PvuII	CAGCTG	3 cut(s)	1019, 1655, 2120
RsaI	GTAC	7 cut(s)	126, 164, 992, 1188, 1347, 1453, 2259
RsaNI	GTAC	7 cut(s)	125, 163, 991, 1187, 1346, 1452, 2258
RseI	CAYNNNNRTG	3 cut(s)	29, 1181, 2105
SacI	GAGCTC	3 cut(s)	590, 635, 2302
SacII	CCGCGG	1 cut(s)	334
SalI	GTCGAC	1 cut(s)	275
SaqAI	TTAA	5 cut(s)	39, 1755, 1857, 2229, 2487
Sau3AI	GATC	9 cut(s)	260, 529, 1117, 1321, 1531, 1603, 1741, 1876, 2269
Sau96I	GGNCC	4 cut(s)	98, 318, 737, 1708
SchI	GAGTC	7 cut(s)	476, 617, 1060, 1079, 1085, 1115, 1387
ScrFI	CCNGG	9 cut(s)	139, 140, 208, 272, 347, 501, 726, 1518, 2499
SduI	GDGCHC	5 cut(s)	218, 590, 635, 1866, 2302
SfaNI	GCATC	1 cut(s)	1150
SfcI	CTRYAG	1 cut(s)	1386
SfoI	GGCGCC	1 cut(s)	451
Sfr303I	CCGCGG	1 cut(s)	334
SfuI	TTCGAA	1 cut(s)	758
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	4 cut(s)	98, 318, 737, 1708
SmaI	CCCGGG	1 cut(s)	140
SmiMI	CAYNNNNRTG	3 cut(s)	29, 1181, 2105
SmlI	CTYRAG	1 cut(s)	2486
SmoI	CTYRAG	1 cut(s)	2486
SphI	GCATGC	1 cut(s)	1483
SspDI	GGCGCC	1 cut(s)	449
SspI	AATATT	1 cut(s)	2187
SspMI	CTAG	6 cut(s)	654, 1232, 1466, 1563, 2004, 2096
SstI	GAGCTC	3 cut(s)	590, 635, 2302
StyD4I	CCNGG	9 cut(s)	137, 138, 206, 270, 345, 499, 724, 1516, 2497
StyI	CCWWGG	3 cut(s)	1236, 2201, 2247
TaaI	ACNGT	8 cut(s)	365, 1140, 1183, 1264, 1683, 1696, 1762, 2133
TaiI	ACGT	2 cut(s)	14, 2091
TaqI	TCGA	9 cut(s)	118, 276, 470, 584, 590, 611, 635, 758, 857
TaqII	GACCGA	3 cut(s)	335, 480, 1117
TatI	WGTACW	1 cut(s)	1345
TauI	GCSGC	5 cut(s)	234, 251, 405, 450, 828
TfiI	GAWTC	7 cut(s)	356, 613, 637, 806, 854, 1152, 1501
Tru1I	TTAA	5 cut(s)	39, 1755, 1857, 2229, 2487
Tru9I	TTAA	5 cut(s)	39, 1755, 1857, 2229, 2487
TscAI	CASTG	3 cut(s)	1127, 1143, 1780
TseFI	GTSAC	3 cut(s)	296, 1918, 2047
TseI	GCWGC	6 cut(s)	968, 1019, 1385, 1388, 1652, 2333
Tsp45I	GTSAC	3 cut(s)	296, 1918, 2047
TspDTI	ATGAA	6 cut(s)	17, 104, 1611, 1761, 2031, 2333
TspGWI	ACGGA	5 cut(s)	526, 630, 679, 1616, 1700
TspMI	CCCGGG	1 cut(s)	138
TspRI	CASTG	3 cut(s)	1127, 1143, 1780
Tth111I	GACNNNGTC	1 cut(s)	302
Vha464I	CTTAAG	1 cut(s)	2486
VpaK11BI	GGWCC	4 cut(s)	98, 318, 737, 1708
XapI	RAATTY	7 cut(s)	92, 689, 742, 754, 1748, 2018, 2210
XbaI	TCTAGA	1 cut(s)	1465
XceI	RCATGY	2 cut(s)	1483, 1790
XmaI	CCCGGG	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	6 cut(s)	654, 1232, 1466, 1563, 2004, 2096
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.