RchiOBHm_Chr1g0360621

Protein of unknown function (DUF4079)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011218
Physical Location & Seq
Forward (+)
52437144 .. 52439247
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
ATGAGCATGGCGGCCACGCTCAGCTTCCTCAAGCTTCCTGTTCTCCTTCCCCACAAAACCAACTATTGCATCTCAAAATTACAAGTACAACCCTCATCATCAAAACCCAATATTCCAAAGCAGGACTCAACTACTTCCCCACAGAAACTAGTCATCACAACCACCCTCCACAGCCTCAAGTCAGCTTCTCTTCCCCTCACAGCTCTCGCATTGCCATTTTTCTTGGACCCCAAGGATGCATTTGCTGTTGGTGGGGAGTTTGGGATTTTGGAGGGAAGGACGTTTGCTCTGATACACCCAATTGTGATGGGCGGGTTGTTCGTTTACACATTGTGGGCCGGGTATTTGGGCTGGCAATGGAGGCGGGTCAGGACAATCCAGAATGAGATTAGTGAGCTCAAGAAGCAAGAGAAGCCTACCCCTGTCACACCAGATGGGACACCAGTTGAAGCACCACCATCTCCTGTTGCTCTTCAAATTAAGCAACTCAGTGAGGAAAGGAAGGAGTTGGTGAAAGGGAATTACCGGGATAGACACTTCAATGCAGGATCAATACTGCTCGCTTTTGGAGTTTTTGAGGCGATTGGTGGAGGAGTTAACACATGGTTTAGGACTGGAAAGCTATTTCCGGGTCCCCATTTATTTGCAGGAGCAGGCATCACGGTGCTATGGGCAGCAGCTGCTGCACTTGTACCTGCAATGCAAAAGGGGAATGAGACGGCTAGAAGCCTTCACATTGCAATCAACGCGATAAACGTTCTGCTTTTCATATGGCAGATACCTACTGGACTTGACATAGTTTGGAAAGTGTTTGAATTCACTAAATGGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4079

Protein Analysis

277

Amino Acids

30.44

Weight (kDa)

9.68

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4079 PF13301 96 - 269 7.9e-46 Protein of unknown function (DUF4079)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011218)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61870 AT3G61870
fragaria_vesca FvH4_7g17240 FvH4_7g17240 FvH4_7g17240
malus_domestica MD01G1086200.v1.1 MD07G1155100.v1.1
prunus_persica Prupe.2G193800_v2.0.a1
pyrus_communis pycom07g15230
rosa_chinensis RchiOBHm_Chr1g0360621
rosa_laevigata RLG00000027794
rosa_multiflora Rmu_sc0007110.1_g000006
rosa_roxburghii Rroxscaffold_4G00295950
rosa_rugosa Rorug01G0280300.1 Rorug01G0280400
rosa_samantha Rh1AG292300 Rh1BG257200 Rh1CG275000 Rh1DG287100
rosa_wichuraiana Rw1G025880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 703
AccII CGCG 1 cut(s) 749
AciI CCGC 3 cut(s) 11, 312, 364
AclI AACGTT 1 cut(s) 756
AclWI GGATC 1 cut(s) 556
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 815
AdeI CACNNNGTG 1 cut(s) 333
AfaI GTAC 2 cut(s) 87, 693
AgsI TTSAA 4 cut(s) 449, 476, 541, 815
AhlI ACTAGT 1 cut(s) 148
AluBI AGCT 7 cut(s) 24, 34, 185, 203, 397, 622, 680
AluI AGCT 7 cut(s) 24, 34, 185, 203, 397, 622, 680
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 710
AlwI GGATC 1 cut(s) 556
AlwNI CAGNNNCTG 2 cut(s) 680, 683
AoxI GGCC 3 cut(s) 12, 336, 827
ApeKI GCWGC 4 cut(s) 674, 677, 680, 683
ApoI RAATTY 1 cut(s) 815
AspS9I GGNCC 3 cut(s) 226, 336, 632
AsuC2I CCSGG 3 cut(s) 340, 527, 630
AsuHPI GGTGA 1 cut(s) 523
AvaII GGWCC 2 cut(s) 226, 632
BanII GRGCYC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 4 cut(s) 667, 670, 686, 689
BccI CCATC 3 cut(s) 301, 428, 466
BceAI ACGGC 1 cut(s) 735
BcnI CCSGG 3 cut(s) 340, 527, 630
BcoDI GTCTC 1 cut(s) 710
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 2 cut(s) 149, 723
BfuAI ACCTGC 1 cut(s) 703
BisI GCNGC 5 cut(s) 12, 675, 678, 681, 684
BlpI GCTNAGC 1 cut(s) 20
BlsI GCNGC 5 cut(s) 13, 676, 679, 682, 685
Bme1390I CCNGG 3 cut(s) 340, 527, 630
Bme18I GGWCC 2 cut(s) 226, 632
BmgT120I GGNCC 3 cut(s) 226, 336, 632
BmiI GGNNCC 3 cut(s) 228, 633, 634
BmrFI CCNGG 3 cut(s) 340, 527, 630
BmsI GCATC 3 cut(s) 78, 226, 666
Bpu1102I GCTNAGC 1 cut(s) 20
BpuEI CTTGAG 3 cut(s) 14, 161, 383
BpuMI CCSGG 3 cut(s) 340, 527, 630
BsaJI CCNNGG 1 cut(s) 231
Bse1I ACTGG 3 cut(s) 443, 619, 790
Bse3DI GCAATG 4 cut(s) 209, 362, 705, 735
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 241
BseMI GCAATG 4 cut(s) 209, 362, 705, 735
BseMII CTCAG 2 cut(s) 34, 502
BseNI ACTGG 3 cut(s) 443, 619, 790
BseRI GAGGAG 1 cut(s) 606
BseXI GCAGC 4 cut(s) 667, 670, 686, 689
BsgI GTGCAG 1 cut(s) 669
Bsh1236I CGCG 1 cut(s) 749
BshFI GGCC 3 cut(s) 14, 338, 829
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 3 cut(s) 339, 526, 629
BslFI GGGAC 2 cut(s) 451, 618
BsmAI GTCTC 1 cut(s) 710
BsmBI CGTCTC 1 cut(s) 710
BsmFI GGGAC 2 cut(s) 451, 618
BsnI GGCC 3 cut(s) 14, 338, 829
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 1 cut(s) 548
Bsp1720I GCTNAGC 1 cut(s) 20
BspACI CCGC 3 cut(s) 11, 312, 364
BspANI GGCC 3 cut(s) 14, 338, 829
BspCNI CTCAG 2 cut(s) 33, 501
BspFNI CGCG 1 cut(s) 749
BspLI GGNNCC 3 cut(s) 228, 633, 634
BspMI ACCTGC 1 cut(s) 703
BspPI GGATC 1 cut(s) 556
BspQI GCTCTTC 1 cut(s) 477
BsrDI GCAATG 4 cut(s) 209, 362, 705, 735
BsrI ACTGG 3 cut(s) 443, 619, 790
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 548
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 2 cut(s) 195, 477
BstAPI GCANNNNNTGC 2 cut(s) 680, 683
BstC8I GCNNGC 3 cut(s) 353, 561, 655
BstDEI CTNAG 2 cut(s) 20, 488
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 749
BstKTI GATC 1 cut(s) 551
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 1 cut(s) 548
BstMWI GCNNNNNNNGC 6 cut(s) 361, 403, 412, 680, 683, 746
BstSCI CCNGG 3 cut(s) 338, 525, 628
BstUI CGCG 1 cut(s) 749
BstV1I GCAGC 4 cut(s) 667, 670, 686, 689
BsuRI GGCC 3 cut(s) 14, 338, 829
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 496
BveI ACCTGC 1 cut(s) 703
Cac8I GCNNGC 3 cut(s) 353, 561, 655
CaiI CAGNNNCTG 2 cut(s) 680, 683
Cfr13I GGNCC 3 cut(s) 226, 336, 632
Csp6I GTAC 2 cut(s) 86, 692
CviAII CATG 2 cut(s) 7, 603
CviQI GTAC 2 cut(s) 86, 692
DdeI CTNAG 2 cut(s) 20, 488
DpnI GATC 1 cut(s) 550
DpnII GATC 1 cut(s) 548
DraIII CACNNNGTG 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 195, 477
EarI CTCTTC 2 cut(s) 195, 477
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 2 cut(s) 226, 632
Eco53kI GAGCTC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 815
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 710
FaeI CATG 2 cut(s) 10, 606
FaiI YATR 6 cut(s) 8, 604, 670, 770, 772, 797
FaqI GGGAC 2 cut(s) 451, 618
FatI CATG 2 cut(s) 6, 602
FauI CCCGC 2 cut(s) 305, 357
FauNDI CATATG 1 cut(s) 770
Fnu4HI GCNGC 5 cut(s) 12, 675, 678, 681, 684
FokI GGATG 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 5 cut(s) 12, 675, 678, 681, 684
FspBI CTAG 2 cut(s) 149, 723
GluI GCNGC 5 cut(s) 12, 675, 678, 681, 684
HaeIII GGCC 3 cut(s) 14, 338, 829
HapII CCGG 3 cut(s) 339, 526, 629
Hin1II CATG 2 cut(s) 10, 606
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 125
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 3 cut(s) 339, 526, 629
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 2 cut(s) 325, 598
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 3 cut(s) 370, 379, 400
Hpy8I GTNNAC 2 cut(s) 325, 598
HpyAV CCTTC 4 cut(s) 56, 270, 496, 740
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 2 cut(s) 281, 756
HpyCH4V TGCA 8 cut(s) 69, 239, 545, 647, 686, 698, 703, 740
HpyF10VI GCNNNNNNNGC 6 cut(s) 361, 403, 412, 680, 683, 746
HpyF3I CTNAG 2 cut(s) 20, 488
HpySE526I ACGT 2 cut(s) 281, 756
Hsp92II CATG 2 cut(s) 10, 606
KflI GGGWCCC 1 cut(s) 632
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 1 cut(s) 548
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 4 cut(s) 667, 670, 686, 689
LweI GCATC 3 cut(s) 78, 226, 666
MaeI CTAG 2 cut(s) 149, 723
MaeII ACGT 2 cut(s) 281, 756
MaeIII GTNAC 1 cut(s) 424
MalI GATC 1 cut(s) 550
MboI GATC 1 cut(s) 548
MboII GAAGA 2 cut(s) 182, 464
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 5 cut(s) 77, 300, 477, 520, 815
MlyI GAGTC 1 cut(s) 119
Mph1103I ATGCAT 1 cut(s) 241
MseI TTAA 2 cut(s) 480, 597
MslI CAYNNNNRTG 2 cut(s) 540, 662
MspA1I CMGCKG 1 cut(s) 680
MspI CCGG 3 cut(s) 339, 526, 629
MspR9I CCNGG 3 cut(s) 340, 527, 630
MunI CAATTG 1 cut(s) 300
MvnI CGCG 1 cut(s) 749
MwoI GCNNNNNNNGC 6 cut(s) 361, 403, 412, 680, 683, 746
NciI CCSGG 3 cut(s) 340, 527, 630
NdeI CATATG 1 cut(s) 770
NdeII GATC 1 cut(s) 548
NlaIII CATG 2 cut(s) 10, 606
NlaIV GGNNCC 3 cut(s) 228, 633, 634
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 477
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PkrI GCNGC 5 cut(s) 13, 676, 679, 682, 685
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 399
Psp1406I AACGTT 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 632
PspN4I GGNNCC 3 cut(s) 228, 633, 634
PspPI GGNCC 3 cut(s) 226, 336, 632
PspPPI RGGWCCY 1 cut(s) 632
PstNI CAGNNNCTG 2 cut(s) 680, 683
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 2 cut(s) 87, 693
RsaNI GTAC 2 cut(s) 86, 692
RseI CAYNNNNRTG 2 cut(s) 540, 662
SacI GAGCTC 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 477
SaqAI TTAA 2 cut(s) 480, 597
SatI GCNGC 5 cut(s) 12, 675, 678, 681, 684
Sau3AI GATC 1 cut(s) 548
Sau96I GGNCC 3 cut(s) 226, 336, 632
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 3 cut(s) 340, 527, 630
SduI GDGCHC 1 cut(s) 399
SfaNI GCATC 3 cut(s) 78, 226, 666
SinI GGWCC 2 cut(s) 226, 632
SmiMI CAYNNNNRTG 2 cut(s) 540, 662
SmlI CTYRAG 3 cut(s) 29, 176, 398
SmoI CTYRAG 3 cut(s) 29, 176, 398
SpeI ACTAGT 1 cut(s) 148
Sse9I AATT 5 cut(s) 77, 300, 477, 520, 815
SsiI CCGC 3 cut(s) 11, 312, 364
SspI AATATT 1 cut(s) 112
SspMI CTAG 2 cut(s) 149, 723
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 3 cut(s) 338, 525, 628
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 2 cut(s) 284, 759
TasI AATT 5 cut(s) 77, 300, 477, 520, 815
TatI WGTACW 1 cut(s) 85
TauI GCSGC 1 cut(s) 14
Tru1I TTAA 2 cut(s) 480, 597
Tru9I TTAA 2 cut(s) 480, 597
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 4 cut(s) 674, 677, 680, 683
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 757
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 226, 632
XapI RAATTY 1 cut(s) 815
XspI CTAG 2 cut(s) 149, 723
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.