RchiOBHm_Chr1g0361821
NAC Family

inactive purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007460
Physical Location & Seq
Reverse (-)
53640756 .. 53643935
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1161 bp
ATGGGTCCTTTTTTCACGGCGGCGGCGTTGGTGGTGTTGCTTCCGATCTGGGTTTTGGCGGCGGCGAAGCACCATGAAGAGAAACCCATGAGGCTGAGGTTTGGGGGTGATGGGCAGTTTAAGATACTGCAAGTGGCGGACATGCACTATGCCGATGGGAAAACGACGCCGTGTGAGGATGTGCTGCCGTCACAGGTGGCGGGTTGCTCTGACCTTAATACGACGGCGTTTGTTCAGCGGATGATTCAGGCTGAGAAGCCCAATTTCATTGTTTTCACCGGAGATAACATCTTTGGGTTTGATGCTACGGATGCTGCTAAATCAATGGATGCAGCATTTGCCCCAGCAATCACGTCCAACATTCCGTGGGCAGCTGTTTTGGGGAACCATGATCAGGAGTCGGACCTTTCGAGGGAAGGGGTAATGAAGCACATAGTTAAGTATAAAAGCACCCAGGCTCAACTCAATCCTTCGGATCAAGATGTTATTGATGGTTTCGGGAACTATAACCTGGAGGTAGGTGGAGTTCAGGGGACTGGTTTTGAAAACAAATCGGTTCTCAACCTATACTTCCTTGACAGTGGAGATTACTCCACAGTTCCCTCTATCCCTGGCTATGGTTGGATCAAACCCTCCCAGCAATTTTGGTTCCAACAAACTTCAGCAAAGCTAAAGAAAGCATATATGAAAAAGCCACAGGCGCAGAAATCACCAGCTCCAGGGCTCGCATACTTTCACATACCGTTACCAGAATATGCTAGTTTTGACTCATCAAACTTCACAGGAGTGAGGCAAGAAGGCATTAGCTCTGCCTCTGTGAACTCTGGCTTCTTCACAACTCTGGTTGAAGCAGGCGATGTAAAGGCAGCTTTCACAGGCCATGATCACCTCAATGACTTCTGTGGGAAGCTAACTGGCATAAACCTTTGTTATGCTGGGGGATTCGGATACCATGCATATGGGAAGGCAGGATGGGATAGGAGAGCAAGGGTGGTAGCAGCAACCTTAGAGAAAACAAATACTGGAGGTTGGGGAGCAGTCAAGTCAATCAAAACATGGAAACGCCTCGACAATCAGCACCTCAGTACTATCGATAGTGAGGTTCTCTGGACCAAGAGTTCTGCGGGTGCACGTAGAAAGAAACCCATTGGCGGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

386

Amino Acids

41.97

Weight (kDa)

8.19

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 40 - 296 5.5e-13 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 20, 23, 59, 62, 137, 200, 238, 1124, 1152
AclWI GGATC 2 cut(s) 483, 632
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 1 cut(s) 1087
AfiI CCNNNNNNNGG 5 cut(s) 394, 412, 617, 719, 1151
AgsI TTSAA 2 cut(s) 545, 848
AjiI CACGTC 1 cut(s) 354
AjnI CCWGG 4 cut(s) 453, 510, 610, 718
AleI CACNNNNGTG 1 cut(s) 785
AloI GAACNNNNNNTCC 2 cut(s) 1102, 1134
AluBI AGCT 6 cut(s) 374, 670, 716, 807, 869, 910
AluI AGCT 6 cut(s) 374, 670, 716, 807, 869, 910
Alw21I GWGCWC 1 cut(s) 1132
Alw44I GTGCAC 1 cut(s) 1128
AlwI GGATC 2 cut(s) 483, 632
AoxI GGCC 1 cut(s) 877
ApaLI GTGCAC 1 cut(s) 1128
ApeKI GCWGC 6 cut(s) 184, 314, 332, 371, 866, 998
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 4 cut(s) 5, 403, 1110, 1154
AsuHPI GGTGA 4 cut(s) 119, 268, 702, 878
AvaII GGWCC 4 cut(s) 5, 403, 1110, 1154
BaeGI GKGCMC 1 cut(s) 1132
BanII GRGCYC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 1132
BbvCI CCTCAGC 1 cut(s) 95
BbvI GCAGC 6 cut(s) 171, 301, 344, 383, 878, 1010
BccI CCATC 4 cut(s) 104, 149, 485, 966
BceAI ACGGC 4 cut(s) 33, 154, 172, 240
BciT130I CCWGG 4 cut(s) 455, 512, 612, 720
BciVI GTATCC 1 cut(s) 941
BclI TGATCA 2 cut(s) 391, 883
BfaI CTAG 1 cut(s) 759
BfuI GTATCC 1 cut(s) 941
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 4 cut(s) 455, 512, 612, 720
Bme18I GGWCC 4 cut(s) 5, 403, 1110, 1154
BmgBI CACGTC 1 cut(s) 354
BmgT120I GGNCC 4 cut(s) 5, 403, 1110, 1154
BmiI GGNNCC 3 cut(s) 6, 386, 650
BmrFI CCNGG 4 cut(s) 455, 512, 612, 720
BmsI GCATC 3 cut(s) 292, 301, 319
BpmI CTGGAG 3 cut(s) 533, 702, 1044
Bpu10I CCTNAGC 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 1092
BsaAI YACGTR 1 cut(s) 1133
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 365, 453, 610, 719
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 5 cut(s) 394, 412, 617, 719, 1151
Bse1I ACTGG 3 cut(s) 541, 919, 1027
BseBI CCWGG 4 cut(s) 455, 512, 612, 720
BseCI ATCGAT 1 cut(s) 1092
BseDI CCNNGG 4 cut(s) 365, 453, 610, 719
BseGI GGATG 5 cut(s) 184, 246, 316, 334, 977
BseLI CCNNNNNNNGG 5 cut(s) 394, 412, 617, 719, 1151
BseMII CTCAG 3 cut(s) 86, 243, 1096
BseNI ACTGG 3 cut(s) 541, 919, 1027
BseSI GKGCMC 1 cut(s) 1132
BseXI GCAGC 6 cut(s) 171, 301, 344, 383, 878, 1010
BseYI CCCAGC 3 cut(s) 343, 636, 935
BshFI GGCC 1 cut(s) 879
BshVI ATCGAT 1 cut(s) 1092
BsiHKAI GWGCWC 1 cut(s) 1132
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 5 cut(s) 394, 412, 617, 719, 1151
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 1 cut(s) 879
Bsp1286I GDGCHC 2 cut(s) 726, 1132
Bsp143I GATC 5 cut(s) 45, 391, 475, 624, 883
BspACI CCGC 9 cut(s) 20, 23, 59, 62, 137, 200, 238, 1124, 1152
BspANI GGCC 1 cut(s) 879
BspCNI CTCAG 3 cut(s) 87, 244, 1095
BspDI ATCGAT 1 cut(s) 1092
BspLI GGNNCC 3 cut(s) 6, 386, 650
BspPI GGATC 2 cut(s) 483, 632
BsrI ACTGG 3 cut(s) 541, 919, 1027
BssECI CCNNGG 4 cut(s) 365, 453, 610, 719
BssMI GATC 5 cut(s) 45, 391, 475, 624, 883
BssNI GRCGYC 1 cut(s) 167
Bst2UI CCWGG 4 cut(s) 455, 512, 612, 720
Bst4CI ACNGT 3 cut(s) 581, 598, 744
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 1133
BstC8I GCNNGC 2 cut(s) 726, 853
BstDEI CTNAG 4 cut(s) 95, 252, 1006, 1082
BstDSI CCRYGG 1 cut(s) 365
BstF5I GGATG 5 cut(s) 184, 246, 316, 334, 977
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 5 cut(s) 48, 394, 478, 627, 886
BstMBI GATC 5 cut(s) 45, 391, 475, 624, 883
BstMWI GCNNNNNNNGC 3 cut(s) 311, 338, 700
BstNI CCWGG 4 cut(s) 455, 512, 612, 720
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 4 cut(s) 453, 510, 610, 718
BstSLI GKGCMC 1 cut(s) 1132
BstV1I GCAGC 6 cut(s) 171, 301, 344, 383, 878, 1010
BstXI CCANNNNNNTGG 1 cut(s) 959
Bsu15I ATCGAT 1 cut(s) 1092
BsuI GTATCC 1 cut(s) 941
BsuRI GGCC 1 cut(s) 879
BsuTUI ATCGAT 1 cut(s) 1092
BtgI CCRYGG 1 cut(s) 365
BtgZI GCGATG 1 cut(s) 870
BtrI CACGTC 1 cut(s) 354
BtsCI GGATG 5 cut(s) 184, 246, 316, 334, 977
BtsIMutI CAGTG 1 cut(s) 586
Cac8I GCNNGC 2 cut(s) 726, 853
CfoI GCGC 1 cut(s) 703
Cfr13I GGNCC 4 cut(s) 5, 403, 1110, 1154
ClaI ATCGAT 1 cut(s) 1092
CseI GACGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 1086
CviAII CATG 7 cut(s) 74, 88, 142, 389, 881, 953, 1056
CviQI GTAC 1 cut(s) 1086
DdeI CTNAG 4 cut(s) 95, 252, 1006, 1082
DpnI GATC 5 cut(s) 47, 393, 477, 626, 885
DpnII GATC 5 cut(s) 45, 391, 475, 624, 883
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 726
Eco47I GGWCC 4 cut(s) 5, 403, 1110, 1154
Eco57I CTGAAG 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 4 cut(s) 453, 510, 610, 718
EcoT22I ATGCAT 1 cut(s) 958
EcoT38I GRGCYC 1 cut(s) 726
FaeI CATG 7 cut(s) 77, 91, 145, 392, 884, 956, 1059
FaqI GGGAC 1 cut(s) 547
FatI CATG 7 cut(s) 73, 87, 141, 388, 880, 952, 1055
FauI CCCGC 2 cut(s) 193, 1117
FauNDI CATATG 1 cut(s) 958
FbaI TGATCA 2 cut(s) 391, 883
FokI GGATG 5 cut(s) 191, 253, 323, 341, 984
FriOI GRGCYC 1 cut(s) 726
FspBI CTAG 1 cut(s) 759
GlaI GCGC 1 cut(s) 702
GsaI CCCAGC 3 cut(s) 347, 640, 939
GsuI CTGGAG 3 cut(s) 533, 702, 1044
HaeIII GGCC 1 cut(s) 879
HapII CCGG 1 cut(s) 279
HgaI GACGC 1 cut(s) 175
HhaI GCGC 1 cut(s) 703
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 7 cut(s) 77, 91, 145, 392, 884, 956, 1059
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HinfI GANTC 4 cut(s) 244, 398, 767, 942
HpaII CCGG 1 cut(s) 279
HphI GGTGA 4 cut(s) 119, 268, 702, 878
Hpy166II GTNNAC 2 cut(s) 820, 1130
Hpy188I TCNGA 5 cut(s) 45, 211, 403, 475, 947
Hpy188III TCNNGA 4 cut(s) 395, 479, 499, 1108
Hpy8I GTNNAC 2 cut(s) 820, 1130
Hpy99I CGWCG 2 cut(s) 169, 226
HpyAV CCTTC 4 cut(s) 410, 480, 791, 958
HpyCH4III ACNGT 3 cut(s) 581, 598, 744
HpyCH4IV ACGT 2 cut(s) 353, 1132
HpyCH4V TGCA 5 cut(s) 130, 145, 332, 956, 1130
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 338, 700
HpyF3I CTNAG 4 cut(s) 95, 252, 1006, 1082
HpySE526I ACGT 2 cut(s) 353, 1132
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 7 cut(s) 77, 91, 145, 392, 884, 956, 1059
HspAI GCGC 1 cut(s) 701
Ksp22I TGATCA 2 cut(s) 391, 883
Kzo9I GATC 5 cut(s) 45, 391, 475, 624, 883
LmnI GCTCC 2 cut(s) 721, 1034
Lsp1109I GCAGC 6 cut(s) 171, 301, 344, 383, 878, 1010
LweI GCATC 3 cut(s) 292, 301, 319
MaeI CTAG 1 cut(s) 759
MaeII ACGT 2 cut(s) 353, 1132
MaeIII GTNAC 2 cut(s) 189, 744
MalI GATC 5 cut(s) 47, 393, 477, 626, 885
MboI GATC 5 cut(s) 45, 391, 475, 624, 883
MboII GAAGA 2 cut(s) 89, 823
MhlI GDGCHC 2 cut(s) 726, 1132
MluCI AATT 2 cut(s) 262, 641
MlyI GAGTC 2 cut(s) 407, 761
MmeI TCCRAC 4 cut(s) 381, 381, 602, 676
Mph1103I ATGCAT 1 cut(s) 958
MseI TTAA 3 cut(s) 120, 216, 438
MslI CAYNNNNRTG 3 cut(s) 785, 891, 957
MspA1I CMGCKG 2 cut(s) 238, 374
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 4 cut(s) 455, 512, 612, 720
MvaI CCWGG 4 cut(s) 455, 512, 612, 720
MwoI GCNNNNNNNGC 3 cut(s) 311, 338, 700
NdeI CATATG 1 cut(s) 958
NdeII GATC 5 cut(s) 45, 391, 475, 624, 883
NlaIII CATG 7 cut(s) 77, 91, 145, 392, 884, 956, 1059
NlaIV GGNNCC 3 cut(s) 6, 386, 650
NmuCI GTSAC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 958
NspI RCATGY 1 cut(s) 145
OliI CACNNNNGTG 1 cut(s) 785
PcsI WCGNNNNNNNCGW 2 cut(s) 23, 407
PfeI GAWTC 2 cut(s) 244, 942
PleI GAGTC 2 cut(s) 406, 761
PpsI GAGTC 2 cut(s) 406, 761
Ppu21I YACGTR 1 cut(s) 1133
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 4 cut(s) 453, 510, 610, 718
PspFI CCCAGC 3 cut(s) 343, 636, 935
PspGI CCWGG 4 cut(s) 453, 510, 610, 718
PspN4I GGNNCC 3 cut(s) 6, 386, 650
PspPI GGNCC 4 cut(s) 5, 403, 1110, 1154
PspPPI RGGWCCY 1 cut(s) 5
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 1087
RsaNI GTAC 1 cut(s) 1086
RseI CAYNNNNRTG 3 cut(s) 785, 891, 957
SaqAI TTAA 3 cut(s) 120, 216, 438
Sau3AI GATC 5 cut(s) 45, 391, 475, 624, 883
Sau96I GGNCC 4 cut(s) 5, 403, 1110, 1154
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 2 cut(s) 407, 761
ScrFI CCNGG 4 cut(s) 455, 512, 612, 720
SduI GDGCHC 2 cut(s) 726, 1132
SfaNI GCATC 3 cut(s) 292, 301, 319
SinI GGWCC 4 cut(s) 5, 403, 1110, 1154
SmiMI CAYNNNNRTG 3 cut(s) 785, 891, 957
Sse9I AATT 2 cut(s) 262, 641
SsiI CCGC 9 cut(s) 20, 23, 59, 62, 137, 200, 238, 1124, 1152
SspMI CTAG 1 cut(s) 759
StyD4I CCNGG 4 cut(s) 453, 510, 610, 718
TaaI ACNGT 3 cut(s) 581, 598, 744
TaiI ACGT 2 cut(s) 356, 1135
TaqI TCGA 3 cut(s) 410, 1068, 1092
TasI AATT 2 cut(s) 262, 641
TatI WGTACW 1 cut(s) 1085
TauI GCSGC 4 cut(s) 23, 26, 62, 65
TfiI GAWTC 2 cut(s) 244, 942
Tru1I TTAA 3 cut(s) 120, 216, 438
Tru9I TTAA 3 cut(s) 120, 216, 438
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 6 cut(s) 184, 314, 332, 371, 866, 998
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 4 cut(s) 90, 256, 440, 701
TspGWI ACGGA 2 cut(s) 323, 354
TspRI CASTG 1 cut(s) 586
VneI GTGCAC 1 cut(s) 1128
VpaK11BI GGWCC 4 cut(s) 5, 403, 1110, 1154
XceI RCATGY 1 cut(s) 145
XspI CTAG 1 cut(s) 759
ZrmI AGTACT 1 cut(s) 1087
Zsp2I ATGCAT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.