Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Forward (+)

54016578 .. 54018747

Gene Structure 2170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAGCAGAAAGATGGAAATGCAGCAATACTGTGCACATGAATGGAAGTCCATCTTAGGTGCAATAGCCGATTCCGAAAATTCTAAAGGCGGCTTTGACTGCAACATCTGCTCAGACTTTGCACACGAGCCAGTGGTCACCCTCTGTGGCCATCTGTGCTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGCGCCTCCCTTGCATCTGATGAGTGCCTCAGTGCCCTGTTTGCAAGAAACAAGATTTATTTGAGGTGGAATGTGGCAATGTGCAGTGAATGTTTTGAGGCAATCCACCCCAGTGGCTTTACACTACCACTGTTCATTTTATTTGTATTGGTTTTGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

118

Amino Acids

13.35

Weight (kDa)

5.89

Isoelectric Point (pI)

58.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4	PF00097	34 - 63	4.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4	PF15227	34 - 67	1.6e-06	zinc finger of C3HC4-type, RING
zf-C3HC4_2	PF13923	34 - 64	7.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	79
AjiI	CACGTC	1 cut(s)	190
AleI	CACNNNNGTG	1 cut(s)	306
Alw21I	GWGCWC	1 cut(s)	37
Alw44I	GTGCAC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	148, 164
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	22, 159
ApoI	RAATTY	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	130
BaeGI	GKGCMC	2 cut(s)	37, 232
BalI	TGGCCA	1 cut(s)	150
BauI	CACGAG	1 cut(s)	125
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	34, 146
BccI	CCATC	3 cut(s)	7, 59, 159
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	3 cut(s)	23, 91, 160
BlsI	GCNGC	3 cut(s)	24, 92, 161
BmgBI	CACGTC	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	180, 218
BmuI	ACTGGG	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	131, 306
Bse3DI	GCAATG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	126, 238
BseNI	ACTGG	2 cut(s)	131, 306
BseSI	GKGCMC	2 cut(s)	37, 232
BseXI	GCAGC	2 cut(s)	34, 146
BsgI	GTGCAG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	150, 166
BsiHKAI	GWGCWC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	150, 166
Bsp1286I	GDGCHC	2 cut(s)	37, 232
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	2 cut(s)	150, 166
BspCNI	CTCAG	2 cut(s)	125, 237
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	131, 306
BssSI	CACGAG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	32, 327
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	3 cut(s)	55, 112, 224
BstEII	GGTNACC	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	6 cut(s)	99, 108, 156, 168, 206, 236
BstPI	GGTNACC	1 cut(s)	136
BstSLI	GKGCMC	2 cut(s)	37, 232
BstV1I	GCAGC	2 cut(s)	34, 146
BstXI	CCANNNNNNTGG	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	150, 166
BtrI	CACGTC	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	5 cut(s)	138, 232, 286, 313, 323
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	200
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	7 cut(s)	68, 93, 130, 150, 166, 184, 312
CviKI_1	RGCY	7 cut(s)	68, 93, 130, 150, 166, 184, 312
DdeI	CTNAG	3 cut(s)	55, 112, 224
EaeI	YGGCCR	1 cut(s)	148
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
FaeI	CATG	1 cut(s)	41
FaiI	YATR	2 cut(s)	39, 355
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	23, 91, 160
Fsp4HI	GCNGC	3 cut(s)	23, 91, 160
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	23, 91, 160
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	150, 166
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	71
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	3 cut(s)	76, 115, 214
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	32, 327
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	9 cut(s)	22, 35, 62, 102, 122, 171, 209, 239, 279
HpyF10VI	GCNNNNNNNGC	6 cut(s)	99, 108, 156, 168, 206, 236
HpyF3I	CTNAG	3 cut(s)	55, 112, 224
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	1 cut(s)	198
LpnPI	CCDG	5 cut(s)	144, 148, 206, 245, 319
Lsp1109I	GCAGC	2 cut(s)	34, 146
LweI	GCATC	2 cut(s)	180, 218
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	136
MhlI	GDGCHC	2 cut(s)	37, 232
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	1 cut(s)	79
MluNI	TGGCCA	1 cut(s)	150
MnlI	CCTC	5 cut(s)	152, 211, 233, 252, 286
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
MslI	CAYNNNNRTG	2 cut(s)	40, 306
Msp20I	TGGCCA	1 cut(s)	150
MwoI	GCNNNNNNNGC	6 cut(s)	99, 108, 156, 168, 206, 236
NlaIII	CATG	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	136
OliI	CACNNNNGTG	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	24, 92, 161
PspEI	GGTNACC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	40, 306
SatI	GCNGC	3 cut(s)	23, 91, 160
SduI	GDGCHC	2 cut(s)	37, 232
SetI	ASST	3 cut(s)	61, 192, 263
SfaNI	GCATC	2 cut(s)	180, 218
SmiMI	CAYNNNNRTG	2 cut(s)	40, 306
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	32, 327
TaiI	ACGT	1 cut(s)	192
TasI	AATT	1 cut(s)	79
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	71
TscAI	CASTG	5 cut(s)	138, 232, 286, 313, 330
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	22, 159
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	2 cut(s)	54, 319
TspRI	CASTG	5 cut(s)	138, 232, 286, 313, 330
VneI	GTGCAC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.