Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Reverse (-)

1679490 .. 1680342

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG024100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGACTTACCTTTGCAACTTCGTACAGCAGATATCGTTTTCAGTTCCAACTTCAATGGGGACACAAGAGGCATCTGTGGAAGAATCAAATTGGAAGAGCAGAAAGATGGAAATGCAGCAATACTGTGCACGTGAATGGAAGTCCATCTTAGGTGCAACAGCCGATTCTGAAAATTCTAAAGGCGGCTTTGACTGCAACATCTGCTCAGATTTTGCACACGAGCCAGTGGTCACCCTCTTGTGGCCATCTGTACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGCTCCTCCCTTGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

102

Amino Acids

11.45

Weight (kDa)

4.98

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	172
AcvI	CACGTG	1 cut(s)	131
AfaI	GTAC	2 cut(s)	24, 252
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	54
AjiI	CACGTC	1 cut(s)	284
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw21I	GWGCWC	2 cut(s)	130, 294
Alw44I	GTGCAC	1 cut(s)	126
AoxI	GGCC	2 cut(s)	242, 258
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	218
BbrPI	CACGTG	1 cut(s)	131
Bbv12I	GWGCWC	2 cut(s)	130, 294
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	3 cut(s)	100, 152, 253
BisI	GCNGC	2 cut(s)	116, 184
BlsI	GCNGC	2 cut(s)	117, 185
BmgBI	CACGTC	1 cut(s)	284
BmsI	GCATC	2 cut(s)	80, 274
BsaAI	YACGTR	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	2 cut(s)	244, 260
BsiHKAI	GWGCWC	2 cut(s)	130, 294
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	244, 260
Bsp1286I	GDGCHC	2 cut(s)	130, 294
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	2 cut(s)	244, 260
BspCNI	CTCAG	1 cut(s)	218
BspQI	GCTCTTC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstBAI	YACGTR	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	148, 205
BstEII	GGTNACC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	192, 201, 262
BstPI	GGTNACC	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	244, 260
BtrI	CACGTC	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	258
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	23, 251
CviJI	RGCY	7 cut(s)	161, 186, 223, 244, 260, 278, 292
CviKI_1	RGCY	7 cut(s)	161, 186, 223, 244, 260, 278, 292
CviQI	GTAC	2 cut(s)	23, 251
DdeI	CTNAG	2 cut(s)	148, 205
EaeI	YGGCCR	1 cut(s)	242
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	292
Eco72I	CACGTG	1 cut(s)	131
Eco91I	GGTNACC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	294
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	116, 184
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	116, 184
GluI	GCNGC	2 cut(s)	116, 184
HaeIII	GGCC	2 cut(s)	244, 260
HgaI	GACGC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	83, 164
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	3 cut(s)	169, 208, 308
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	130, 283
HpyCH4V	TGCA	7 cut(s)	15, 115, 128, 155, 195, 215, 265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	192, 201, 262
HpyF3I	CTNAG	2 cut(s)	148, 205
HpySE526I	ACGT	2 cut(s)	130, 283
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	3 cut(s)	237, 242, 300
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	80, 274
MaeII	ACGT	2 cut(s)	130, 283
MaeIII	GTNAC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	92, 106
MhlI	GDGCHC	2 cut(s)	130, 294
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	2 cut(s)	88, 172
MluNI	TGGCCA	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	61, 245, 305
Mox20I	TGGCCA	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	133
Msp20I	TGGCCA	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	192, 201, 262
NmuCI	GTSAC	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	83, 164
PkrI	GCNGC	2 cut(s)	117, 185
PmaCI	CACGTG	1 cut(s)	131
PmlI	CACGTG	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	131
Psp124BI	GAGCTC	1 cut(s)	294
PspCI	CACGTG	1 cut(s)	131
PspEI	GGTNACC	1 cut(s)	229
RsaI	GTAC	2 cut(s)	24, 252
RsaNI	GTAC	2 cut(s)	23, 251
RseI	CAYNNNNRTG	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	89
SatI	GCNGC	2 cut(s)	116, 184
SduI	GDGCHC	2 cut(s)	130, 294
SetI	ASST	5 cut(s)	12, 133, 154, 286, 294
SfaNI	GCATC	2 cut(s)	80, 274
SmiMI	CAYNNNNRTG	1 cut(s)	133
Sse9I	AATT	2 cut(s)	88, 172
SsiI	CCGC	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	2 cut(s)	133, 286
TasI	AATT	2 cut(s)	88, 172
TatI	WGTACW	1 cut(s)	250
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	2 cut(s)	83, 164
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	229
TspRI	CASTG	1 cut(s)	231
VneI	GTGCAC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.