Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Reverse (-)

62884732 .. 62886901

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG402100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTGGAGCCATCAGAGGGTCCTGTCCAAGCTGATGATCATGCAGGAAGCAATAGTTTGAAATCAAGGGAGTCCTCCGATGCTAAAGAAGAAACCTCGAGACAAAAGATTGTTATTAAAGAGGAAAAGGCAGCTATTGCATCTAGGTATATGCAAGGTTTTTCGACATTAATTTCAAAAGCTAACTCACAAGATTCTAGTGGAGGTGGGAAGCACAATGATAATGAGAGTGGTGGTAAGAAGCAGGTTGGCATGATAAAAGGCAAACAGCAAGAGCTTAATGGTCAGGTGAATGATGGAAAGATGGAAATGCAGAAATACTGTGTACGTGAATGGAAGTCCATCTTAGGTGCAACAGCCGATTCTGAAAATTCTAAAGGCGGCTTTGACTGCAACATCTGCTCAGATTTTGCACACGAGCCAGTGGTCACCCTCTTGTGGCCATCTGTACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGTGCCTCCCTTGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

168

Amino Acids

18.22

Weight (kDa)

5.83

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AciI	CCGC	1 cut(s)	381
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	2 cut(s)	327, 450
AfiI	CCNNNNNNNGG	2 cut(s)	17, 438
AgsI	TTSAA	2 cut(s)	61, 177
AjiI	CACGTC	1 cut(s)	482
AluBI	AGCT	4 cut(s)	32, 134, 182, 277
AluI	AGCT	4 cut(s)	32, 134, 182, 277
Alw26I	GTCTC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	2 cut(s)	440, 456
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	370
AseI	ATTAAT	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	301, 421
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	20
BalI	TGGCCA	1 cut(s)	442
BauI	CACGAG	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	5 cut(s)	19, 290, 298, 350, 451
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	144, 198
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	132, 382
BlsI	GCNGC	2 cut(s)	133, 383
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	9, 21
BmsI	GCATC	3 cut(s)	70, 149, 472
BsaAI	YACGTR	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 438
Bse1I	ACTGG	1 cut(s)	422
BseLI	CCNNNNNNNGG	2 cut(s)	17, 438
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	143
BshFI	GGCC	2 cut(s)	442, 458
BsiHKCI	CYCGRG	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	17, 438
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	442, 458
BsoBI	CYCGRG	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	442, 458
BspCNI	CTCAG	1 cut(s)	416
BspLI	GGNNCC	2 cut(s)	9, 21
BspMI	ACCTGC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	422
BssMI	GATC	1 cut(s)	37
BssSI	CACGAG	1 cut(s)	416
Bst2BI	CACGAG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	323
BstAPI	GCANNNNNTGC	2 cut(s)	137, 399
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	2 cut(s)	346, 403
BstEII	GGTNACC	1 cut(s)	427
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 390, 399, 460, 498
BstPI	GGTNACC	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	442, 458
BtrI	CACGTC	1 cut(s)	482
BtsIMutI	CAGTG	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	326, 449
CviAII	CATG	2 cut(s)	41, 253
CviQI	GTAC	2 cut(s)	326, 449
DdeI	CTNAG	2 cut(s)	346, 403
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	427
EcoO109I	RGGNCCY	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	427
FaeI	CATG	2 cut(s)	44, 256
FaiI	YATR	4 cut(s)	42, 150, 152, 254
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	2 cut(s)	40, 252
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	132, 382
Fsp4HI	GCNGC	2 cut(s)	132, 382
FspBI	CTAG	2 cut(s)	144, 198
GluI	GCNGC	2 cut(s)	132, 382
HaeIII	GGCC	2 cut(s)	442, 458
HgaI	GACGC	1 cut(s)	490
Hin1II	CATG	2 cut(s)	44, 256
HinfI	GANTC	3 cut(s)	71, 194, 362
HphI	GGTGA	2 cut(s)	301, 421
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	5 cut(s)	16, 79, 367, 406, 506
Hpy188III	TCNNGA	2 cut(s)	99, 485
Hpy8I	GTNNAC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	2 cut(s)	328, 481
HpyCH4V	TGCA	8 cut(s)	44, 140, 154, 313, 353, 393, 413, 463
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 390, 399, 460, 498
HpyF3I	CTNAG	2 cut(s)	346, 403
HpySE526I	ACGT	2 cut(s)	328, 481
Hsp92II	CATG	2 cut(s)	44, 256
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	7 cut(s)	30, 36, 230, 272, 435, 440, 498
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	3 cut(s)	70, 149, 472
MaeI	CTAG	2 cut(s)	144, 198
MaeII	ACGT	2 cut(s)	328, 481
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	2 cut(s)	171, 370
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	10, 85, 106, 115, 197, 443, 503
Mox20I	TGGCCA	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	3 cut(s)	117, 170, 279
Msp20I	TGGCCA	1 cut(s)	442
MwoI	GCNNNNNNNGC	5 cut(s)	137, 390, 399, 460, 498
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	44, 256
NlaIV	GGNNCC	2 cut(s)	9, 21
NmuCI	GTSAC	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	194, 362
PkrI	GCNGC	2 cut(s)	133, 383
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	20
PshBI	ATTAAT	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	9, 21
PspPI	GGNCC	1 cut(s)	20
PspPPI	RGGWCCY	1 cut(s)	20
RsaI	GTAC	2 cut(s)	327, 450
RsaNI	GTAC	2 cut(s)	326, 449
SaqAI	TTAA	3 cut(s)	117, 170, 279
SatI	GCNGC	2 cut(s)	132, 382
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	80
SfaNI	GCATC	3 cut(s)	70, 149, 472
Sfr274I	CTCGAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	171, 370
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	2 cut(s)	144, 198
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	2 cut(s)	331, 484
TaqI	TCGA	2 cut(s)	98, 164
TasI	AATT	2 cut(s)	171, 370
TatI	WGTACW	1 cut(s)	448
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	194, 362
Tru1I	TTAA	3 cut(s)	117, 170, 279
Tru9I	TTAA	3 cut(s)	117, 170, 279
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	427
TspRI	CASTG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	97
XspI	CTAG	2 cut(s)	144, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.