Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Forward (+)

47326681 .. 47328811

Gene Structure 2131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATTGCTCAGGGAATCAATGCGGGAGATGTTGAAGATTCAGGACACAAGGATCTACATCTGGCAACTGCACCAAGAAGGAGGGATTTTAAATTAGATCAAATGGTGGAGCCATCAGAGGGTCCAGTCCAAGCTGATGATCATGCAGGAAGCAATAGTTTGAAATCAAGGGAGTCCTCCGATGCTAAAGAAGAAACCTCGAGACAAAAGATTGTTATTAAAGAGGAAAAGGCAGCTATTGCATCTAGGTATATGCAAGGTTTTTCGACATTAATTTCAAAAGCTAACTCACAAGATTCTAGTGGAGGTGGGAAGCACAATGATAATGAGAGTGGTGGTAAGAAGCAGGTTGGCATGATAAAAGGCAAACAGCAAGAGCTTAATGGTCAGGTGGAAGAATTAAATTGGAAGAGCAGAAAGATGGAAATGCAGCAATACTGTGCACGTGAATGGAAGTCCATCTTAGGTGCAACAGCCGATTCTGAAAATTCTAAAGGCGGCTTTGACTGCAACATCTGCTCAGATTTTGCACACGAGCCAGTGGTCACCCTCTTGTGGCCATCTGTACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGCGCCTCCCTTGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

207

Amino Acids

22.76

Weight (kDa)

6.09

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AciI	CCGC	2 cut(s)	23, 498
AclWI	GGATC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	487
AcvI	CACGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	2 cut(s)	119, 555
AgsI	TTSAA	3 cut(s)	35, 163, 279
AjiI	CACGTC	1 cut(s)	599
AluBI	AGCT	4 cut(s)	134, 236, 284, 379
AluI	AGCT	4 cut(s)	134, 236, 284, 379
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	196
Alw44I	GTGCAC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	2 cut(s)	557, 573
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	233, 430
ApoI	RAATTY	1 cut(s)	487
AseI	ATTAAT	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	609
AspS9I	GGNCC	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	559
BauI	CACGAG	1 cut(s)	533
BbrPI	CACGTG	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	245, 442
BccI	CCATC	4 cut(s)	121, 415, 467, 568
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	2 cut(s)	246, 300
BfoI	RGCGCY	1 cut(s)	610
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	3 cut(s)	234, 431, 499
BlsI	GCNGC	3 cut(s)	235, 432, 500
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	199
BmgBI	CACGTC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	111, 123
BmsI	GCATC	3 cut(s)	172, 251, 589
Bpu10I	CCTNAGC	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 555
Bse1I	ACTGG	2 cut(s)	125, 539
Bse8I	GATNNNNATC	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	119, 555
BseMII	CTCAG	2 cut(s)	23, 534
BseNI	ACTGG	2 cut(s)	125, 539
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	245, 442
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	559, 575
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	119, 555
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	559, 575
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	3 cut(s)	52, 97, 139
BspACI	CCGC	2 cut(s)	23, 498
BspANI	GGCC	2 cut(s)	559, 575
BspCNI	CTCAG	2 cut(s)	22, 533
BspLI	GGNNCC	2 cut(s)	111, 123
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	60
BspQI	GCTCTTC	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	125, 539
BssMI	GATC	3 cut(s)	52, 97, 139
BssSI	CACGAG	1 cut(s)	533
Bst2BI	CACGAG	1 cut(s)	533
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	404
BstAPI	GCANNNNNTGC	2 cut(s)	239, 516
BstBAI	YACGTR	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	3 cut(s)	9, 463, 520
BstEII	GGTNACC	1 cut(s)	544
BstH2I	RGCGCY	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	609
BstKTI	GATC	3 cut(s)	55, 100, 142
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	52, 97, 139
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 507, 516, 577, 615
BstPI	GGTNACC	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	245, 442
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	559, 575
BtrI	CACGTC	1 cut(s)	599
BtsIMutI	CAGTG	1 cut(s)	546
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	573
CfoI	GCGC	1 cut(s)	609
Cfr13I	GGNCC	1 cut(s)	122
CseI	GACGC	1 cut(s)	607
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	2 cut(s)	143, 355
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	3 cut(s)	9, 463, 520
DpnI	GATC	3 cut(s)	54, 99, 141
DpnII	GATC	3 cut(s)	52, 97, 139
DraI	TTTAAA	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	122
Eco72I	CACGTG	1 cut(s)	446
Eco88I	CYCGRG	1 cut(s)	199
Eco91I	GGTNACC	1 cut(s)	544
EcoO65I	GGTNACC	1 cut(s)	544
FaeI	CATG	2 cut(s)	146, 358
FaiI	YATR	4 cut(s)	144, 252, 254, 356
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FatI	CATG	2 cut(s)	142, 354
FauI	CCCGC	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	234, 431, 499
Fsp4HI	GCNGC	3 cut(s)	234, 431, 499
FspBI	CTAG	2 cut(s)	246, 300
GlaI	GCGC	1 cut(s)	608
GluI	GCNGC	3 cut(s)	234, 431, 499
HaeII	RGCGCY	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	559, 575
HgaI	GACGC	1 cut(s)	607
HhaI	GCGC	1 cut(s)	609
Hin1II	CATG	2 cut(s)	146, 358
Hin6I	GCGC	1 cut(s)	607
HinP1I	GCGC	1 cut(s)	607
HinfI	GANTC	5 cut(s)	15, 38, 173, 296, 479
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	1 cut(s)	443
Hpy188I	TCNGA	5 cut(s)	118, 181, 484, 523, 623
Hpy188III	TCNNGA	3 cut(s)	42, 201, 602
Hpy8I	GTNNAC	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	2 cut(s)	445, 598
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 507, 516, 577, 615
HpyF3I	CTNAG	3 cut(s)	9, 463, 520
HpySE526I	ACGT	2 cut(s)	445, 598
Hsp92II	CATG	2 cut(s)	146, 358
HspAI	GCGC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	52, 97, 139
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	27, 47, 132, 138, 332, 374, 552, 557, 615
Lsp1109I	GCAGC	2 cut(s)	245, 442
LweI	GCATC	3 cut(s)	172, 251, 589
MaeI	CTAG	2 cut(s)	246, 300
MaeII	ACGT	2 cut(s)	445, 598
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	3 cut(s)	54, 99, 141
MboI	GATC	3 cut(s)	52, 97, 139
MboII	GAAGA	4 cut(s)	47, 203, 407, 421
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	445
MlsI	TGGCCA	1 cut(s)	559
MluCI	AATT	5 cut(s)	92, 273, 398, 403, 487
MluNI	TGGCCA	1 cut(s)	559
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	8 cut(s)	75, 112, 187, 208, 217, 299, 560, 620
Mox20I	TGGCCA	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	5 cut(s)	90, 219, 272, 381, 401
MslI	CAYNNNNRTG	1 cut(s)	448
Msp20I	TGGCCA	1 cut(s)	559
MwoI	GCNNNNNNNGC	5 cut(s)	239, 507, 516, 577, 615
NdeII	GATC	3 cut(s)	52, 97, 139
NlaIII	CATG	2 cut(s)	146, 358
NlaIV	GGNNCC	2 cut(s)	111, 123
NmuCI	GTSAC	1 cut(s)	544
PaeR7I	CTCGAG	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	404
PfeI	GAWTC	4 cut(s)	15, 38, 296, 479
PkrI	GCNGC	3 cut(s)	235, 432, 500
PleI	GAGTC	1 cut(s)	181
PmaCI	CACGTG	1 cut(s)	446
PmlI	CACGTG	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	181
Ppu21I	YACGTR	1 cut(s)	446
PshBI	ATTAAT	1 cut(s)	272
PspCI	CACGTG	1 cut(s)	446
PspEI	GGTNACC	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	111, 123
PspPI	GGNCC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	5 cut(s)	90, 219, 272, 381, 401
SatI	GCNGC	3 cut(s)	234, 431, 499
Sau3AI	GATC	3 cut(s)	52, 97, 139
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	445
SfaNI	GCATC	3 cut(s)	172, 251, 589
Sfr274I	CTCGAG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	5 cut(s)	92, 273, 398, 403, 487
SsiI	CCGC	2 cut(s)	23, 498
SspMI	CTAG	2 cut(s)	246, 300
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	2 cut(s)	448, 601
TaqI	TCGA	2 cut(s)	200, 266
TasI	AATT	5 cut(s)	92, 273, 398, 403, 487
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	4 cut(s)	15, 38, 296, 479
Tru1I	TTAA	5 cut(s)	90, 219, 272, 381, 401
Tru9I	TTAA	5 cut(s)	90, 219, 272, 381, 401
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	2 cut(s)	233, 430
Tsp45I	GTSAC	1 cut(s)	544
TspRI	CASTG	1 cut(s)	546
VneI	GTGCAC	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	272
XapI	RAATTY	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	199
XspI	CTAG	2 cut(s)	246, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.