Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Forward (+)

71626100 .. 71629879

Gene Structure 3780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG495200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAAATGCAGCAATACTGTGCACATGAATGGAAGTCCATCTTAGGTGCAATAGCTGATTTTGAAAATTCTAAAGGCGGCTTTGACTGCAACATCTGCTCAGACTTTGCACACGAGCCAGTGGTCACCCTCTGTGGCCATCTGTACTGCTGGCCTTGCATCTACAAATGGCTTCACATCCAGAGCGCCTTCCTTGCATCTGATGAGTGCCCTGTTTGCAAGAAACAAGATGTATTTGAAGTGGAATGTGGCAATGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

87

Amino Acids

9.91

Weight (kDa)

4.75

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	29 - 74	1.2e-08	Ring finger domain
zf-RING_5	PF14634	29 - 75	1e-07	zinc-RING finger domain
zf-C3HC4_3	PF13920	29 - 75	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	30 - 73	8.9e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	30 - 73	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	30 - 57	3.7e-07	RING-type zinc-finger
zf-C3HC4_4	PF15227	30 - 73	1.2e-06	zinc finger of C3HC4-type, RING

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	67
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	65, 239
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	21
AoxI	GGCC	2 cut(s)	136, 152
ApaLI	GTGCAC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	118
BaeGI	GKGCMC	2 cut(s)	25, 212
BalI	TGGCCA	1 cut(s)	138
BauI	CACGAG	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	47, 147
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	2 cut(s)	11, 79
BlsI	GCNGC	2 cut(s)	12, 80
BmsI	GCATC	2 cut(s)	168, 206
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	259
BseGI	GGATG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	2 cut(s)	25, 212
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	2 cut(s)	138, 154
BsiHKAI	GWGCWC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	138, 154
Bsp1286I	GDGCHC	2 cut(s)	25, 212
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	2 cut(s)	138, 154
BspCNI	CTCAG	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	43, 100
BstEII	GGTNACC	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 96, 156, 194, 216
BstPI	GGTNACC	1 cut(s)	124
BstSLI	GKGCMC	2 cut(s)	25, 212
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	138, 154
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	6 cut(s)	56, 81, 118, 138, 154, 172
CviKI_1	RGCY	6 cut(s)	56, 81, 118, 138, 154, 172
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	43, 100
EaeI	YGGCCR	1 cut(s)	136
Eco91I	GGTNACC	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	124
FaeI	CATG	1 cut(s)	29
FaiI	YATR	1 cut(s)	27
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	11, 79
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	11, 79
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	11, 79
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	138, 154
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	103, 202
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4V	TGCA	9 cut(s)	10, 23, 50, 90, 110, 159, 197, 219, 259
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 96, 156, 194, 216
HpyF3I	CTNAG	2 cut(s)	43, 100
Hsp92II	CATG	1 cut(s)	29
HspAI	GCGC	1 cut(s)	186
LpnPI	CCDG	4 cut(s)	132, 136, 194, 225
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	168, 206
MaeIII	GTNAC	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	25, 212
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	1 cut(s)	67
MluNI	TGGCCA	1 cut(s)	138
MnlI	CCTC	1 cut(s)	140
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	28
Msp20I	TGGCCA	1 cut(s)	138
MwoI	GCNNNNNNNGC	5 cut(s)	87, 96, 156, 194, 216
NlaIII	CATG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	12, 80
PspEI	GGTNACC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	28
SatI	GCNGC	2 cut(s)	11, 79
SduI	GDGCHC	2 cut(s)	25, 212
SetI	ASST	2 cut(s)	49, 58
SfaNI	GCATC	2 cut(s)	168, 206
SmiMI	CAYNNNNRTG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	20
TasI	AATT	1 cut(s)	67
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	81
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	126
VneI	GTGCAC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.