Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Forward (+)

53684938 .. 53686384

Gene Structure 1447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTGGAGCCATCAGAGGGTCCAGTCCAAGCTGATGATCATGTAGGAAGCAATAGTTTGAAATCAAGGGAGTCCTCCGATGCTAAAGAAGAAACCTCGAGACAAAAGATTGTTTTTAAAGAGGAAAAGGCAGCTATTGCATCTAGGTATATGCAAGGTTTTTCAACATTAAATTCAAAAGCTAACTCACAAGATTCTAGTGGAGGTGGGAAGCACAATGATAATGAGAGTGGTGGTAAGAAGCAGGTTGGCATGATAAAAGGCAAACAGCAAGAGCTTAATGGTCAGACGGAGAGGGCTTTCCTCAAACAGCCCAAGGTTTTCCTTAGGTGGAAGAATCAAATTGGAAGAGCAGAAAGATGGAAATGCAGCAATACTGTGCACGTGAATGGAAGTCCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

134

Amino Acids

14.77

Weight (kDa)

9.55

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	172
AcvI	CACGTG	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	61, 165, 177
AluBI	AGCT	4 cut(s)	32, 134, 182, 277
AluI	AGCT	4 cut(s)	32, 134, 182, 277
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	97
ApaLI	GTGCAC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	131, 369
ApoI	RAATTY	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	20
AxyI	CCTNAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	384
BbrPI	CACGTG	1 cut(s)	385
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	143, 381
BccI	CCATC	2 cut(s)	19, 354
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	144, 198
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	132, 370
BlsI	GCNGC	2 cut(s)	133, 371
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	9, 21
BmsI	GCATC	2 cut(s)	70, 149
BsaAI	YACGTR	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	143, 381
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	9, 21
BspMI	ACCTGC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	1 cut(s)	343
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	326, 402
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	143, 381
Bsu36I	CCTNAGG	1 cut(s)	326
BveI	ACCTGC	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	20
CviAII	CATG	2 cut(s)	41, 253
CviJI	RGCY	7 cut(s)	10, 32, 134, 182, 277, 299, 313
CviKI_1	RGCY	7 cut(s)	10, 32, 134, 182, 277, 299, 313
DdeI	CTNAG	2 cut(s)	326, 402
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
DraI	TTTAAA	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	20
Eco72I	CACGTG	1 cut(s)	385
Eco81I	CCTNAGG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	44, 256
FaiI	YATR	4 cut(s)	42, 150, 152, 254
FalI	AAGNNNNNCTT	1 cut(s)	385
FatI	CATG	2 cut(s)	40, 252
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	132, 370
Fsp4HI	GCNGC	2 cut(s)	132, 370
FspBI	CTAG	2 cut(s)	144, 198
GluI	GCNGC	2 cut(s)	132, 370
Hin1II	CATG	2 cut(s)	44, 256
HinfI	GANTC	3 cut(s)	71, 194, 337
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	16, 79, 288
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	4 cut(s)	140, 154, 369, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	326, 402
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	44, 256
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	2 cut(s)	36, 230
Lsp1109I	GCAGC	2 cut(s)	143, 381
LweI	GCATC	2 cut(s)	70, 149
MaeI	CTAG	2 cut(s)	144, 198
MaeII	ACGT	1 cut(s)	384
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	3 cut(s)	101, 346, 360
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	2 cut(s)	172, 342
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	10, 85, 106, 115, 197, 288, 314
MseI	TTAA	3 cut(s)	117, 170, 279
MslI	CAYNNNNRTG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	44, 256
NlaIV	GGNNCC	2 cut(s)	9, 21
PaeR7I	CTCGAG	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	194, 337
PkrI	GCNGC	2 cut(s)	133, 371
PleI	GAGTC	1 cut(s)	79
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	385
PspCI	CACGTG	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	9, 21
PspPI	GGNCC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	117, 170, 279
SatI	GCNGC	2 cut(s)	132, 370
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	70, 149
Sfr274I	CTCGAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	172, 342
SspMI	CTAG	2 cut(s)	144, 198
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	172, 342
TfiI	GAWTC	2 cut(s)	194, 337
Tru1I	TTAA	3 cut(s)	117, 170, 279
Tru9I	TTAA	3 cut(s)	117, 170, 279
TseI	GCWGC	2 cut(s)	131, 369
TspGWI	ACGGA	1 cut(s)	305
VneI	GTGCAC	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	97
XspI	CTAG	2 cut(s)	144, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.