Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Reverse (-)

62988792 .. 62991862

Gene Structure 3071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51520

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAAATGCAGCAGTACTGTGCACGTGAATGGAAGTCCATCTTAGGTGCAACAGCAGATTCTGAAAATTCTAAAGGCGGCTTTGACTGCAACATCTGCTCAGATTTTGCACACGAGCCAGTGGTCACCCTCTGTGGCCATCTGTACTGCTGGCCTTGCATCTACAAATGGCTTCACGTCCAGAGCGCCTCCCTTGCGTCTGATGAGTGCCCTCAGTGCCCTGTTTGCAAGAAACAAGATGTATTTGAAGTGGAATGTGGCAATGTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

90

Amino Acids

10.11

Weight (kDa)

4.76

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	29 - 78	1.8e-06	zinc-RING finger domain
zf-RING_2	PF13639	29 - 76	8.8e-07	Ring finger domain
zf-C3HC4	PF00097	30 - 76	1.1e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	30 - 59	3.3e-07	RING-type zinc-finger
zf-C3HC4_4	PF15227	30 - 73	5.8e-07	zinc finger of C3HC4-type, RING
zf-C3HC4_2	PF13923	30 - 73	2.1e-06	Zinc finger, C3HC4 type (RING finger)
RING_XB3-XBAT31	PF24921	30 - 79	1.3e-06	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	67
AcvI	CACGTG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	17, 146
AgsI	TTSAA	1 cut(s)	248
AjiI	CACGTC	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	136, 152
ApaLI	GTGCAC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	118
BaeGI	GKGCMC	3 cut(s)	25, 212, 221
BalI	TGGCCA	1 cut(s)	138
BauI	CACGAG	1 cut(s)	113
BbrPI	CACGTG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	47, 147
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	2 cut(s)	11, 79
BlsI	GCNGC	2 cut(s)	12, 80
BmcAI	AGTACT	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	119
Bse3DI	GCAATG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	114, 227
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	3 cut(s)	25, 212, 221
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	2 cut(s)	138, 154
BsiHKAI	GWGCWC	1 cut(s)	25
BsnI	GGCC	2 cut(s)	138, 154
Bsp1286I	GDGCHC	3 cut(s)	25, 212, 221
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	2 cut(s)	138, 154
BspCNI	CTCAG	2 cut(s)	113, 226
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	3 cut(s)	43, 100, 213
BstEII	GGTNACC	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 96, 156, 194, 216, 225
BstPI	GGTNACC	1 cut(s)	124
BstSLI	GKGCMC	3 cut(s)	25, 212, 221
BstV1I	GCAGC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	138, 154
BtrI	CACGTC	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	126, 221
Cac8I	GCNNGC	1 cut(s)	152
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	188
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	16, 145
CviJI	RGCY	5 cut(s)	81, 118, 138, 154, 172
CviKI_1	RGCY	5 cut(s)	81, 118, 138, 154, 172
CviQI	GTAC	2 cut(s)	16, 145
DdeI	CTNAG	3 cut(s)	43, 100, 213
EaeI	YGGCCR	1 cut(s)	136
Eco72I	CACGTG	1 cut(s)	26
Eco91I	GGTNACC	1 cut(s)	124
EcoO65I	GGTNACC	1 cut(s)	124
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
Fnu4HI	GCNGC	2 cut(s)	11, 79
Fsp4HI	GCNGC	2 cut(s)	11, 79
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	11, 79
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	138, 154
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	3 cut(s)	64, 103, 202
Hpy188III	TCNNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	2 cut(s)	25, 177
HpyCH4V	TGCA	8 cut(s)	10, 23, 50, 90, 110, 159, 228, 268
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 96, 156, 194, 216, 225
HpyF3I	CTNAG	3 cut(s)	43, 100, 213
HpySE526I	ACGT	2 cut(s)	25, 177
HspAI	GCGC	1 cut(s)	186
LpnPI	CCDG	4 cut(s)	132, 136, 194, 234
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	168
MaeII	ACGT	2 cut(s)	25, 177
MaeIII	GTNAC	1 cut(s)	124
MhlI	GDGCHC	3 cut(s)	25, 212, 221
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	1 cut(s)	67
MluNI	TGGCCA	1 cut(s)	138
MnlI	CCTC	3 cut(s)	140, 199, 222
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	28
Msp20I	TGGCCA	1 cut(s)	138
MwoI	GCNNNNNNNGC	6 cut(s)	87, 96, 156, 194, 216, 225
NmuCI	GTSAC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	12, 80
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	26
PspCI	CACGTG	1 cut(s)	26
PspEI	GGTNACC	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	17, 146
RsaNI	GTAC	2 cut(s)	16, 145
RseI	CAYNNNNRTG	1 cut(s)	28
SatI	GCNGC	2 cut(s)	11, 79
ScaI	AGTACT	1 cut(s)	17
SduI	GDGCHC	3 cut(s)	25, 212, 221
SetI	ASST	3 cut(s)	28, 49, 180
SfaNI	GCATC	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	2 cut(s)	28, 180
TasI	AATT	1 cut(s)	67
TatI	WGTACW	2 cut(s)	15, 144
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	2 cut(s)	126, 221
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	124
TspRI	CASTG	2 cut(s)	126, 221
VneI	GTGCAC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	67
ZrmI	AGTACT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.