Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000658.1

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Reverse (-)

31076 .. 33066

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000658.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggtggagccatcagagggtccagtccaagctgatgatcatgcaggaagcaatagtttgaaatcaagggagtcctccgatgctaaagaagaaacctcgagacaaaagattgttattaaagaggaaaaggcagctattgcatctaggtatatgcaaggtttttcgacattaatttcaaaagctaactcacaagattctagtggaggtgggaagcacaatgataatgagagtggtggtaagaagcaggttggcatgataaaaggcaaacagcaagagcttaatggtcaggtggaagaatcaaattggaagagcagaaagatggaaatgcagcaatactgtgcacgtgaatggaagtccatcttaggtgcaacagccgattctgaaaattctaaaggcggctttgactgcaacatctgctcagattttgcacacgagccagtggtcaccctcttgtggccatctgtactgctggccttgcatctacaaatggcttcacgtccagagcgcctcccttgcgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

173

Amino Acids

18.97

Weight (kDa)

6.11

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AciI	CCGC	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	1 cut(s)	385
AcvI	CACGTG	1 cut(s)	344
AfaI	GTAC	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	17, 453
AgsI	TTSAA	2 cut(s)	61, 177
AjiI	CACGTC	1 cut(s)	497
AluBI	AGCT	4 cut(s)	32, 134, 182, 277
AluI	AGCT	4 cut(s)	32, 134, 182, 277
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	2 cut(s)	455, 471
ApaLI	GTGCAC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	131, 328
ApoI	RAATTY	1 cut(s)	385
AseI	ATTAAT	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	457
BauI	CACGAG	1 cut(s)	431
BbrPI	CACGTG	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	143, 340
BccI	CCATC	4 cut(s)	19, 313, 365, 466
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	144, 198
BfoI	RGCGCY	1 cut(s)	508
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	3 cut(s)	132, 329, 397
BlsI	GCNGC	3 cut(s)	133, 330, 398
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	9, 21
BmsI	GCATC	3 cut(s)	70, 149, 487
BsaAI	YACGTR	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 453
Bse1I	ACTGG	2 cut(s)	23, 437
BseLI	CCNNNNNNNGG	2 cut(s)	17, 453
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	23, 437
BseSI	GKGCMC	1 cut(s)	343
BseXI	GCAGC	2 cut(s)	143, 340
BshFI	GGCC	2 cut(s)	457, 473
BsiHKAI	GWGCWC	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	17, 453
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	457, 473
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	2 cut(s)	457, 473
BspCNI	CTCAG	1 cut(s)	431
BspLI	GGNNCC	2 cut(s)	9, 21
BspMI	ACCTGC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	23, 437
BssMI	GATC	1 cut(s)	37
BssSI	CACGAG	1 cut(s)	431
Bst2BI	CACGAG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	302
BstAPI	GCANNNNNTGC	2 cut(s)	137, 414
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	2 cut(s)	361, 418
BstEII	GGTNACC	1 cut(s)	442
BstH2I	RGCGCY	1 cut(s)	508
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 405, 414, 475, 513
BstPI	GGTNACC	1 cut(s)	442
BstSLI	GKGCMC	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	143, 340
BsuRI	GGCC	2 cut(s)	457, 473
BtrI	CACGTC	1 cut(s)	497
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	471
CfoI	GCGC	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	20
CseI	GACGC	1 cut(s)	505
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	2 cut(s)	41, 253
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	2 cut(s)	361, 418
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	20
Eco72I	CACGTG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	442
FaeI	CATG	2 cut(s)	44, 256
FaiI	YATR	4 cut(s)	42, 150, 152, 254
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	2 cut(s)	40, 252
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	132, 329, 397
Fsp4HI	GCNGC	3 cut(s)	132, 329, 397
FspBI	CTAG	2 cut(s)	144, 198
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	3 cut(s)	132, 329, 397
HaeII	RGCGCY	1 cut(s)	508
HaeIII	GGCC	2 cut(s)	457, 473
HgaI	GACGC	1 cut(s)	505
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	2 cut(s)	44, 256
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HinfI	GANTC	4 cut(s)	71, 194, 296, 377
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	5 cut(s)	16, 79, 382, 421, 521
Hpy188III	TCNNGA	2 cut(s)	99, 500
Hpy8I	GTNNAC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	2 cut(s)	343, 496
HpyCH4V	TGCA	9 cut(s)	44, 140, 154, 328, 341, 368, 408, 428, 478
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 405, 414, 475, 513
HpyF3I	CTNAG	2 cut(s)	361, 418
HpySE526I	ACGT	2 cut(s)	343, 496
Hsp92II	CATG	2 cut(s)	44, 256
HspAI	GCGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	7 cut(s)	30, 36, 230, 272, 450, 455, 513
Lsp1109I	GCAGC	2 cut(s)	143, 340
LweI	GCATC	3 cut(s)	70, 149, 487
MaeI	CTAG	2 cut(s)	144, 198
MaeII	ACGT	2 cut(s)	343, 496
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	3 cut(s)	101, 305, 319
MhlI	GDGCHC	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	457
MluCI	AATT	3 cut(s)	171, 301, 385
MluNI	TGGCCA	1 cut(s)	457
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	10, 85, 106, 115, 197, 458, 518
Mox20I	TGGCCA	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	457
MseI	TTAA	3 cut(s)	117, 170, 279
MslI	CAYNNNNRTG	1 cut(s)	346
Msp20I	TGGCCA	1 cut(s)	457
MwoI	GCNNNNNNNGC	5 cut(s)	137, 405, 414, 475, 513
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	44, 256
NlaIV	GGNNCC	2 cut(s)	9, 21
NmuCI	GTSAC	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	194, 296, 377
PkrI	GCNGC	3 cut(s)	133, 330, 398
PleI	GAGTC	1 cut(s)	79
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	344
PshBI	ATTAAT	1 cut(s)	170
PspCI	CACGTG	1 cut(s)	344
PspEI	GGTNACC	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	9, 21
PspPI	GGNCC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	346
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	3 cut(s)	117, 170, 279
SatI	GCNGC	3 cut(s)	132, 329, 397
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	3 cut(s)	70, 149, 487
Sfr274I	CTCGAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	3 cut(s)	171, 301, 385
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	2 cut(s)	144, 198
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	2 cut(s)	346, 499
TaqI	TCGA	2 cut(s)	98, 164
TasI	AATT	3 cut(s)	171, 301, 385
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	3 cut(s)	194, 296, 377
Tru1I	TTAA	3 cut(s)	117, 170, 279
Tru9I	TTAA	3 cut(s)	117, 170, 279
TscAI	CASTG	1 cut(s)	444
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	131, 328
Tsp45I	GTSAC	1 cut(s)	442
TspRI	CASTG	1 cut(s)	444
VneI	GTGCAC	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	97
XspI	CTAG	2 cut(s)	144, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.