Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004637.1

Orthogroup ID

OG0008168

Physical Location & Seq

Genomic Coordinates Reverse (-)

22111 .. 24052

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004637.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggtggagccatcagagggtccagtccaagctgatgatcatgcaggaagcaatagtttgaaatcaagggagtcctccgatgctaaagaagaaacctcgagacaaaagattgttattaaagaggaaaaggcagctattgcatctaggtatatgcaaggtttttcgacattaatttcaaaagctaactcacaagattctagtggaggtgggaagcacaatgataatgagagtggtggtaagaagcaggttggcatgattaaaggcaaacagcaagagcttaatggtcaggtggaagaatcaaattggaagagcagaaagatggaaatgcagcattactgtgcacgtgaatggaagtccatcttaggtgcaacagccgattctgaaaattctaaaggcggctttgactgcaacatctgctcagattttgcacacaagccaatggtcaccctctgtggccatctgtactgctggccttgcatctacaaatggcttcacgtccagagcgcctcccttgcgactgatgagtgccctcagtaccctgtttgcaagaaacaagatgtatttgaagtggaatgtggcaatgtgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4

Protein Analysis

196

Amino Acids

21.7

Weight (kDa)

6.08

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008168)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0362361 RchiOBHm_Chr2g0145341
rosa_multiflora	Rmu_sc0000079.1_g000040 Rmu_sc0000658.1_g000009 Rmu_sc0002824.1_g000018 Rmu_sc0004305.1_g000012 Rmu_sc0004593.1_g000007 Rmu_sc0004637.1_g000004 Rmu_sc0016426.1_g000005
rosa_rugosa	Rorug05G0063300
rosa_samantha	Rh1AG402100 Rh2AG481800 Rh2AG495200 Rh2CG468100 Rh2CG481300 Rh2DG005500 Rh2DG005600 Rh4AG086600 Rh4CG094500 Rh5AG024100 Rh5AG024200 Rh5CG027000
rosa_wichuraiana	Rw2G032630 Rw4G022140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AciI	CCGC	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	385
AcvI	CACGTG	1 cut(s)	344
AfaI	GTAC	2 cut(s)	464, 536
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	61, 177, 566
AjiI	CACGTC	1 cut(s)	496
AluBI	AGCT	4 cut(s)	32, 134, 182, 277
AluI	AGCT	4 cut(s)	32, 134, 182, 277
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	339
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	2 cut(s)	454, 470
ApaLI	GTGCAC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	131, 328
ApoI	RAATTY	1 cut(s)	385
AseI	ATTAAT	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	20
BaeGI	GKGCMC	2 cut(s)	343, 530
BalI	TGGCCA	1 cut(s)	456
BbrPI	CACGTG	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	143, 340
BccI	CCATC	4 cut(s)	19, 313, 365, 465
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	144, 198
BfoI	RGCGCY	1 cut(s)	507
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	3 cut(s)	132, 329, 397
BlsI	GCNGC	3 cut(s)	133, 330, 398
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	9, 21
BmsI	GCATC	3 cut(s)	70, 149, 486
BsaAI	YACGTR	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	2 cut(s)	432, 545
BseNI	ACTGG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	343, 530
BseXI	GCAGC	2 cut(s)	143, 340
BshFI	GGCC	2 cut(s)	456, 472
BsiHKAI	GWGCWC	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	456, 472
BsoBI	CYCGRG	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	343, 530
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	2 cut(s)	456, 472
BspCNI	CTCAG	2 cut(s)	431, 544
BspLI	GGNNCC	2 cut(s)	9, 21
BspMI	ACCTGC	1 cut(s)	235
BspQI	GCTCTTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	23
BssMI	GATC	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	302
BstAPI	GCANNNNNTGC	2 cut(s)	137, 414
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	470
BstDEI	CTNAG	3 cut(s)	361, 418, 531
BstEII	GGTNACC	1 cut(s)	442
BstH2I	RGCGCY	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 405, 414, 474, 512
BstPI	GGTNACC	1 cut(s)	442
BstSLI	GKGCMC	2 cut(s)	343, 530
BstV1I	GCAGC	2 cut(s)	143, 340
BsuRI	GGCC	2 cut(s)	456, 472
BtrI	CACGTC	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	470
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	463, 535
CviAII	CATG	2 cut(s)	41, 253
CviQI	GTAC	2 cut(s)	463, 535
DdeI	CTNAG	3 cut(s)	361, 418, 531
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	20
Eco72I	CACGTG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	442
EcoO65I	GGTNACC	1 cut(s)	442
FaeI	CATG	2 cut(s)	44, 256
FaiI	YATR	4 cut(s)	42, 150, 152, 254
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	2 cut(s)	40, 252
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	132, 329, 397
Fsp4HI	GCNGC	3 cut(s)	132, 329, 397
FspBI	CTAG	2 cut(s)	144, 198
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	3 cut(s)	132, 329, 397
HaeII	RGCGCY	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	456, 472
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	2 cut(s)	44, 256
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HinfI	GANTC	4 cut(s)	71, 194, 296, 377
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	4 cut(s)	16, 79, 382, 421
Hpy188III	TCNNGA	2 cut(s)	99, 499
Hpy8I	GTNNAC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	2 cut(s)	343, 495
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 405, 414, 474, 512
HpyF3I	CTNAG	3 cut(s)	361, 418, 531
HpySE526I	ACGT	2 cut(s)	343, 495
Hsp92II	CATG	2 cut(s)	44, 256
HspAI	GCGC	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	7 cut(s)	30, 36, 230, 272, 454, 512, 552
Lsp1109I	GCAGC	2 cut(s)	143, 340
LweI	GCATC	3 cut(s)	70, 149, 486
MaeI	CTAG	2 cut(s)	144, 198
MaeII	ACGT	2 cut(s)	343, 495
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	3 cut(s)	101, 305, 319
MhlI	GDGCHC	2 cut(s)	343, 530
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	3 cut(s)	171, 301, 385
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	8 cut(s)	10, 85, 106, 115, 197, 458, 517, 540
Mox20I	TGGCCA	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	4 cut(s)	117, 170, 258, 279
MslI	CAYNNNNRTG	2 cut(s)	336, 346
Msp20I	TGGCCA	1 cut(s)	456
MwoI	GCNNNNNNNGC	5 cut(s)	137, 405, 414, 474, 512
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	44, 256
NlaIV	GGNNCC	2 cut(s)	9, 21
NmuCI	GTSAC	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	194, 296, 377
PkrI	GCNGC	3 cut(s)	133, 330, 398
PleI	GAGTC	1 cut(s)	79
PmaCI	CACGTG	1 cut(s)	344
PmlI	CACGTG	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	344
PshBI	ATTAAT	1 cut(s)	170
PspCI	CACGTG	1 cut(s)	344
PspEI	GGTNACC	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	9, 21
PspPI	GGNCC	1 cut(s)	20
RsaI	GTAC	2 cut(s)	464, 536
RsaNI	GTAC	2 cut(s)	463, 535
RseI	CAYNNNNRTG	2 cut(s)	336, 346
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	117, 170, 258, 279
SatI	GCNGC	3 cut(s)	132, 329, 397
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	343, 530
SfaNI	GCATC	3 cut(s)	70, 149, 486
Sfr274I	CTCGAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	336, 346
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	3 cut(s)	171, 301, 385
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	2 cut(s)	144, 198
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	2 cut(s)	346, 498
TaqI	TCGA	2 cut(s)	98, 164
TasI	AATT	3 cut(s)	171, 301, 385
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	3 cut(s)	194, 296, 377
Tru1I	TTAA	4 cut(s)	117, 170, 258, 279
Tru9I	TTAA	4 cut(s)	117, 170, 258, 279
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	131, 328
Tsp45I	GTSAC	1 cut(s)	442
VneI	GTGCAC	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	1 cut(s)	385
XhoI	CTCGAG	1 cut(s)	97
XspI	CTAG	2 cut(s)	144, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.